DRSC/TRiP Functional Genomics Resources

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Protein Alignment hyd and Su(dx)

DIOPT Version :9

Sequence 1:NP_001287262.1 Gene:hyd / 41181 FlyBaseID:FBgn0002431 Length:2887 Species:Drosophila melanogaster
Sequence 2:NP_001259898.1 Gene:Su(dx) / 33379 FlyBaseID:FBgn0003557 Length:949 Species:Drosophila melanogaster


Alignment Length:958 Identity:194/958 - (20%)
Similarity:326/958 - (34%) Gaps:279/958 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  2063 HLLQP-NSKRQELFANLPLLVTTNANNSGATNDGDGGSIFDYTPTRLGFSNSLKRNERVYETVPI 2126
            |:||. |.:.:.|...:.|.||:.::|. .|..|:..:|.          |.||.:....:..|:
  Fly   134 HILQHYNGRCEFLELTIDLFVTSKSDNR-QTKSGELVAIL----------NGLKLDMSKLQIQPV 187

  Fly  2127 DSSKTG-------DGNVTNKAEGSTDSNIY------VQLKKKQGS---------------DDFKS 2163
            ...:.|       :.:|.:.|.......||      ::|:...|:               |..:|
  Fly   188 AGQQNGNPPVQAVNPSVVSDAAAGRSCMIYGGVRARMRLRSSSGNSNGGETRSPLPNGGGDHRRS 252

  Fly  2164 HK-----EADGNQSKYEKVVLMETDDS---LPSTSKSTEALMA-----------------TRPEV 2203
            .:     |....||:.::..|...:.|   :|.|:...:...|                 |:|..
  Fly   253 TQAPPVWEQQQQQSQNQQQPLRMVNGSGAAVPQTAPYPQQPPAPALARPLTQVYGALPENTQPAA 317

  Fly  2204 IIAP--NKASVSPATAARSVIVLAGGSCLKTIDSDINNYSASNLSTAEQAKCDTQYQKSTSDHLL 2266
            :..|  ..|:|.|...|...|                          ||........:||...|.
  Fly   318 VYLPAGGGAAVGPPGVAGPPI--------------------------EQPGVGLPVSQSTDPQLQ 356

  Fly  2267 LFPARGSQFYQSNFSELPSWNFLLSRWKLTLDLFGRVFMDD-----VGMEHGSVLP---ELRGFP 2323
            ..||        :...||      :.|::.||.:||.:..|     ...|..:.||   |:|   
  Fly   357 TQPA--------DDEPLP------AGWEIRLDQYGRRYYVDHNTRSTYWEKPTPLPPGWEIR--- 404

  Fly  2324 VKEMRFR--------RHMEKLRNGQQRDLVLCKLERNRESLIVQTFKELNTQFGNQ----SRRIQ 2376
             |:.|.|        |.....|...:|.:.....:..|..::.|         |||    |::.|
  Fly   405 -KDGRGRVYYVDHNTRKTTWQRPNSERLMHFQHWQGQRAHVVSQ---------GNQRYLYSQQQQ 459

  Fly  2377 PPITFNRVKVTFKDEPGEGSGVARSFYTSIAEALLASAKIPNLESVQVGTNHSKYVVPFSSILRS 2441
            .| |....:||..||...|                   .:|:....::.:::..|.|..    ::
  Fly   460 QP-TAVTAQVTQDDEDALG-------------------PLPDGWEKKIQSDNRVYFVNH----KN 500

  Fly  2442 RTVSGSS-RDQS---TLQRRG---SNSKILWRSARE--------RKALNLDARPYTPPNS----- 2486
            ||..... |.|.   :|...|   ...:|.:.:|.|        |:....|.||..|..:     
  Fly   501 RTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPGAPKGAKGVYG 565

  Fly  2487 --------------------SDNATPESLNDHLSVHLQQIGERLYPKIHSINQTHAPKITGMLLE 2531
                                ..||.|..:.  ::|..|.:.|..|.:|               :.
  Fly   566 VPRAYERSFRWKLSQFRYLCQSNALPSHIK--ITVTRQTLFEDSYHQI---------------MR 613

  Fly  2532 IPTPQL---LSVISSDETLRQKVNEAIEIITFKQKSETSAQSSQPKKSPSVVVVDPVDDDNEPLF 2593
            :|..:|   |.:|...|       |.::.....:  |.....|....:|...:.:..:.:|..|.
  Fly   614 LPAYELRRRLYIIFRGE-------EGLDYGGVSR--EWFFLLSHEVLNPMYCLFEYANKNNYSLQ 669

  Fly  2594 YSPGKRGFYTPRQGFASFERINAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILGRKIKFHDLAF 2658
            .:|.         .:.:.:.:..|:.|||.|.:.|.....:.........|.:|.:|:...|:..
  Fly   670 INPA---------SYVNPDHLQYFKFIGRFIAMALYHGRFIYSGFTMPFYKRMLNKKLTIKDIET 725

  Fly  2659 FDPALYESFRQIIQNAQTKEGEETINRMELCFVIDLMKEEGCG---NRELIPGGRDVAVTSSNIF 2720
            .||..|.|...:..|...:.|      :||.|.:|.   |..|   :.||...|....||..|..
  Fly   726 IDPEFYNSLIWVKDNNIDECG------LELWFSVDF---EVLGQIIHHELKENGEKERVTEENKE 781

  Fly  2721 EYVRRYTEYRLIKSQEKALEALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINV-----STLIS 2780
            ||:...||:|:.:..|:..:...:|..:|:|...:......:|.|:|.|:.|::|     :|:  
  Fly   782 EYITLMTEWRMTRGIEQQTKTFLEGFNEVVPLEWLKYFDERELELILCGMQDVDVEDWQRNTI-- 844

  Fly  2781 YTTFNDESSEGPDKLLKFKKWFWSIVEKMNIMERQDLVYFWTGSPALPASEEGFQ-------PLP 2838
            |..:|..|        |...|||..|.:.:..:|..|:.|.||:..:|..  ||.       |..
  Fly   845 YRHYNRNS--------KQVVWFWQFVRETDNEKRARLLQFVTGTCRVPVG--GFAELMGSNGPQR 899

  Fly  2839 SVTIRPADDSHLPTANTCISRLYIPLYSSKSILRSKMLMAIKSKNFGF 2886
            ....:...::.||.::||.:||.:|.|.|...|..|:..||:... ||
  Fly   900 FCIEKVGKETWLPRSHTCFNRLDLPPYKSYDQLVEKLTFAIEETE-GF 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hydNP_001287262.1 E3_UbLigase_EDD 150..196 CDD:288409
ZnF_UBR1 1217..1284 CDD:197698
ASF1_hist_chap 1535..1733 CDD:304562
PolyA 2498..2561 CDD:197769 11/65 (17%)
HECTc 2589..2885 CDD:238033 77/310 (25%)
HECTc 2589..2884 CDD:214523 77/309 (25%)
Su(dx)NP_001259898.1 C2_E3_ubiquitin_ligase 48..173 CDD:175988 12/49 (24%)
WW 364..396 CDD:197736 9/37 (24%)
WW 397..426 CDD:278809 8/32 (25%)
WW 478..509 CDD:197736 5/34 (15%)
WW 522..554 CDD:197736 5/31 (16%)
HECTc 594..946 CDD:238033 91/408 (22%)
HECTc 620..946 CDD:214523 84/365 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447008
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.830

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