DRSC/TRiP Functional Genomics Resources

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Protein Alignment trbd and otud7b

DIOPT Version :10

Sequence 1:NP_649931.1 Gene:trbd / 41179 FlyBaseID:FBgn0037734 Length:778 Species:Drosophila melanogaster
Sequence 2:XP_005158443.1 Gene:otud7b / 777637 ZFINID:ZDB-GENE-060616-1 Length:920 Species:Danio rerio


Alignment Length:483 Identity:122/483 - (25%)
Similarity:193/483 - (39%) Gaps:118/483 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   342 ACLGVVENNYSAVEAYLSCGGNPARSLTSTEI-AALNRNSAFDVGH---TLIHLAIRFHREEMLP 402
            :|..|.|:.|.::|..::..|.|........: ||..:..:..:.|   |::.|| |.|      
Zfish    53 SCSFVEESEYPSIEKEMARTGRPLLHRQDEAVQAATEKRLSRGISHASSTIVSLA-RSH------ 110

  Fly   403 MLLDQISGSGPGIKRVP--SYVAPDLAA--DIRRHFANTLRLRKSGLPCHYVQKHATFALPAEIE 463
              :....|:...:...|  ::..|||..  |..|.|                           ||
Zfish   111 --VSSTGGTNEQLLDTPLCTFQLPDLTVYRDDFRGF---------------------------IE 146

  Fly   464 ELPIPIQEQLYDELLDRDAQKQLETPPPALNWSLEITARLSSRMFVLWNRSAGDCLLDSAMQATW 528
            .           :|:::.....|| ....|||...:.....| :..|.....|:|||.:|....|
Zfish   147 R-----------DLIEQSMMVALE-QAGRLNWWTRLGTGCQS-LLPLATSGDGNCLLHAASLGMW 198

  Fly   529 GVFDRDNILRRALADTLH--QCGHVFFTRWKEYEMLQASMLHFTLEDSQFEEDWSTLLSLA---- 587
            |..|||.:||::|...:.  |.......||:..:.:|.........:.:::::|:.||.||    
Zfish   199 GFHDRDLMLRKSLYALMDHGQEREALKRRWRWQQTMQNKESGLVYTEEEWQKEWNELLKLASSEP 263

  Fly   588 -------GQPGS---------SLEQLHIFALAHILRRPIIVYGVKYVKSFRGEDIGYARFEGVYL 636
                   |..|:         |||:.|:|.|||:|||||:|.....::...||......|.|:||
Zfish   264 RIHYSTNGSSGAESQEEPVYESLEEFHVFVLAHVLRRPIVVVADTMLRDSGGEAFAPIPFGGIYL 328

  Fly   637 PLFWDQNFCTKSPIALGYTRGHFSALVPMEPFTRIDGRRDDVEDVTYLPLMDCELKLLPIHFLTQ 701
            ||....|.|.:||:.|.|.:.||||||.||       ::|..::...:||.|.:.|:||:||...
Zfish   329 PLEVPANKCHRSPLVLAYDQAHFSALVSME-------QKDSSKEQVVIPLTDSDHKMLPLHFAVD 386

  Fly   702 S----EVGNEESMMRQWLDVCVTDGGLLVAQQKLS---KRPLLVAQMLEEWLNHYRRIAQVITAP 759
            .    |.|.::            :..:::|...||   |..||...|...||.....:.|   ||
Zfish   387 PGADWEWGKDD------------NDNVMLASVTLSLEAKLHLLHCYMTVTWLPLPCEVQQ---AP 436

  Fly   760 FIRRPQITHYSS---------DGDSDEE 778
             :.:|:....|:         .|:||:|
Zfish   437 -LAQPESPTASAGEDARTPPDSGESDKE 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trbdNP_649931.1 zf-RanBP 11..36 CDD:395516
RanBP2-type Zn finger 11..30 CDD:275376
ZnF_RBZ 91..114 CDD:197784
RanBP2-type Zn finger 93..112 CDD:275376
RanBP2-type Zn finger 175..192 CDD:275375
ZnF_RBZ 234..256 CDD:197784
RanBP2-type Zn finger 236..255 CDD:275376
AnkUBD 336..409 CDD:408216 15/70 (21%)
OTU_ZRANB1 480..664 CDD:438604 64/205 (31%)
otud7bXP_005158443.1 UBA_Cezanne_like 4..46 CDD:270532
OTU_OTUD7B 152..356 CDD:438609 64/205 (31%)
SOBP <722..828 CDD:464609
zf-A20 881..905 CDD:460313
Blue background indicates that the domain is not in the aligned region.

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