DRSC/TRiP Functional Genomics Resources

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Protein Alignment trbd and Zranb1

DIOPT Version :9

Sequence 1:NP_649931.1 Gene:trbd / 41179 FlyBaseID:FBgn0037734 Length:778 Species:Drosophila melanogaster
Sequence 2:NP_001349127.1 Gene:Zranb1 / 360216 MGIID:106441 Length:734 Species:Mus musculus


Alignment Length:822 Identity:346/822 - (42%)
Similarity:468/822 - (56%) Gaps:177/822 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KWKCETCTYENYPSSLKCTMCQASKP---LLNEDIFRLSPAQESCTVAEEAAAVEVAVMSPTPSS 71
            ||.||.|||||:||::|||||:|.:|   ::.||.|:    ..|..|..:.          .|||
Mouse    33 KWACEYCTYENWPSAIKCTMCRAQRPSGTIITEDPFK----SGSSDVGRDW----------DPSS 83

  Fly    72 T--------CYSLQPQSQAR-----QSNVADSEKWPCKVCTYLNWPRSLRCVQCCTKRGGEAIER 123
            |        |    |.|.||     ..::.::.||.|.:||||||||::||.||.::|       
Mouse    84 TEGGSSPLIC----PDSSARPRVKSSYSMENANKWSCHMCTYLNWPRAIRCTQCLSQR------- 137

  Fly   124 GKKDMDNEADGDRAGEALQALRISGSEENLANKPVQLIGATASHRLSLSRGIDDATHLN--NLAN 186
                        |.....::.:.|||    .::||..             .:|.....|  |..|
Mouse   138 ------------RTRSPTESPQSSGS----GSRPVAF-------------SVDPCEEYNDRNKLN 173

  Fly   187 ASHNQSQSQHRQPVLQQQMQLQLQPQQQRESSSSAAVPPQQQKQCYVSKWACNSCTYENWPRSIK 251
                 :::||                                       |.|:.||||||.::.|
Mouse   174 -----TRTQH---------------------------------------WTCSVCTYENWAKAKK 194

  Fly   252 CSMCGKTREREISGSQ--NDLHASSSLNSQEE----------NQQQLQQPNVDTVS-VNNSFNKK 303
            |.:|...|...|...:  ....|||.:|.|:.          |.|:...|.....| |...|.:.
Mouse   195 CVVCDHPRPNNIEAIELAETEEASSIINEQDRARWRGGCSSGNSQRRSPPTTKRDSEVKMDFQRI 259

  Fly   304 HIY-QLGSSETINNCDTLQERQERRQRQIR---RQVDWQWLNACLGVVENNYSAVEAYLSCGGNP 364
            .:. .:|:.|.:       |...::.:||:   ::.||.:||||:||||.:.:|:|||.|.||:.
Mouse   260 ELAGAVGTKEEL-------EVDFKKLKQIKNRMKKTDWLFLNACVGVVEGDLAAIEAYKSSGGDI 317

  Fly   365 ARSLTSTEIAALNRNSAFDVGHTLIHLAIRFHREEMLPMLLDQISGSGPGIKRVPSYVAPDLAAD 429
            ||.||:.|:..|||.||||||:||:||||||.|::||.:||.::|..  ..|.:|:.|.|:|...
Mouse   318 ARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTEVSQQ--AAKCIPAMVCPELTEQ 380

  Fly   430 IRRHFANTLRLRKSGLPCHYVQKHATFALPAEIEELPIPIQEQLYDELLDRDAQKQLETPPPALN 494
            |||..|.:|..||....|:::....||.|||:||:||..:||:|:||:||||.||:||...|.:|
Mouse   381 IRREIAASLHQRKGDFACYFLTDLVTFTLPADIEDLPPTVQEKLFDEVLDRDVQKELEEESPIIN 445

  Fly   495 WSLEITARLSSRMFVLWNRSAGDCLLDSAMQATWGVFDRDNILRRALADTLHQCGHVFFTRWKEY 559
            ||||:..||.||::.||||:||||||||.:|||||::|:|::||:||.|:||.|.|.|:||||::
Mouse   446 WSLELATRLDSRLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDW 510

  Fly   560 E--MLQASMLHFTLEDSQFEEDWSTLLSLAGQPGSSLEQLHIFALAHILRRPIIVYGVKYVKSFR 622
            |  ..|:..|||:|.:.|::|||:.:||||.|||:||||.|||.||||||||||||||||.||||
Mouse   511 ESWYSQSFGLHFSLREEQWQEDWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFR 575

  Fly   623 GEDIGYARFEGVYLPLFWDQNFCTKSPIALGYTRGHFSALVPMEPFTRIDG----------RRDD 677
            ||.:||.||:||||||.|:|:||.|||||||||||||||||.||.    ||          ..||
Mouse   576 GETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRGHFSALVAMEN----DGYGNRGAGANLNTDD 636

  Fly   678 VEDVTYLPLMDCELKLLPIHFLTQSEVGNE---ESMMRQWLDVCVTDGGLLVAQQKLSKR---PL 736
            ...:|:|||:|.|.|||.:|||:..|:|||   |.::|:|||.|||:||:|||.||.|:|   | 
Mouse   637 DVTITFLPLVDSERKLLHVHFLSAQELGNEEQQEKLLREWLDCCVTEGGVLVAMQKSSRRRNHP- 700

  Fly   737 LVAQMLEEWLNHYRRIAQVITAPFIRRPQITHYSSDGDSDEE 778
            ||.||:|:||:.||:|          ||..:  .|||:.||:
Mouse   701 LVTQMVEKWLDRYRQI----------RPCTS--LSDGEEDED 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trbdNP_649931.1 zf-RanBP 11..36 CDD:279035 17/27 (63%)
RanBP2-type Zn finger 11..30 CDD:275376 13/18 (72%)
ZnF_RBZ 91..114 CDD:197784 15/22 (68%)
RanBP2-type Zn finger 93..112 CDD:275376 12/18 (67%)
RanBP2-type Zn finger 175..192 CDD:275375 4/18 (22%)
ZnF_RBZ 234..256 CDD:197784 10/21 (48%)
RanBP2-type Zn finger 236..255 CDD:275376 10/18 (56%)
OTU 513..659 CDD:280496 101/147 (69%)
Zranb1NP_001349127.1 ZnF_RBZ 33..55 CDD:197784 16/21 (76%)
RanBP2-type Zn finger 34..53 CDD:275376 13/18 (72%)
ZnF_RBZ 112..133 CDD:197784 13/20 (65%)
RanBP2-type Zn finger 114..133 CDD:275376 12/18 (67%)
ZnF_RBZ 178..201 CDD:197784 12/61 (20%)
RanBP2-type Zn finger 179..198 CDD:275376 10/18 (56%)
AnkUBD 272..367 CDD:375844 48/96 (50%)
OTU 464..612 CDD:334900 101/147 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848904
Domainoid 1 1.000 230 1.000 Domainoid score I2455
eggNOG 1 0.900 - - E1_KOG4345
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9728
Inparanoid 1 1.050 553 1.000 Inparanoid score I1117
Isobase 1 0.950 - 0 Normalized mean entropy S5464
OMA 1 1.010 - - QHG49976
OrthoDB 1 1.010 - - D319972at33208
OrthoFinder 1 1.000 - - FOG0006358
OrthoInspector 1 1.000 - - oto95293
orthoMCL 1 0.900 - - OOG6_107708
Panther 1 1.100 - - LDO PTHR13367
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4304
SonicParanoid 1 1.000 - - X4629
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1817.750

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