DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Unc-115b and ablim1

DIOPT Version :9

Sequence 1:NP_731390.1 Gene:Unc-115b / 41178 FlyBaseID:FBgn0260463 Length:784 Species:Drosophila melanogaster
Sequence 2:XP_031762145.1 Gene:ablim1 / 100170541 XenbaseID:XB-GENE-6455582 Length:839 Species:Xenopus tropicalis


Alignment Length:873 Identity:268/873 - (30%)
Similarity:342/873 - (39%) Gaps:337/873 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 KQKIYCAKCTKKCSGEVLRVADNHFHKACFQCCQCKKSLATGGFFTKDNAYYCIPDYQRLYGTKC 105
            |..|.|.||.:.|.||||||...|||..||.|..|...||.||||.|:..|.|..||||:|||:|
 Frog    95 KPVIRCHKCGEPCKGEVLRVQSKHFHIKCFICKVCGCDLAQGGFFIKNGDYLCTLDYQRMYGTRC 159

  Fly   106 ANCQQYVEGEVVSTMGKTYHQKCFTCSKCKQPFKSGSKVTNTGKEVLCEQCVTGAPVSPSRQATG 170
            :.|.::||||||:.:|||||..||.|:.||:||..|.:||..|::.||:.|.. .|:||      
 Frog   160 SGCGEFVEGEVVTALGKTYHPSCFACTSCKRPFPPGDRVTFNGRDCLCQNCAV-LPMSP------ 217

  Fly   171 GGVSSPAPPAESPTRATAHQQHGSVISHKAHLKEDYDPNDCAGCGELLKEGQALVALDRQWHVSC 235
                       .||                   |..:.:.||||...:|.||||:|||:|||:.|
 Frog   218 -----------GPT-------------------EISNSSSCAGCSREIKNGQALLALDKQWHLGC 252

  Fly   236 FRCKACQAVLNGEYMGKDAVPYCEKCYQKGFGVKCAYCSRFISGKVLQAGDNHHFHPTCARCTKC 300
            |:||:|..||.|||:.||..|||||.||..|||||..|:.||:||||:|||. |:||:||||::|
 Frog   253 FKCKSCGKVLTGEYISKDGSPYCEKDYQLMFGVKCEACNEFITGKVLEAGDK-HYHPSCARCSRC 316

  Fly   301 GDPFGDGEEMYLQGSAIWHPRC-----------------------GPGPSESGIILNGGGGTSSV 342
            ...|.:|||||||||.:|||.|                       .|..|.|..:.:..|  ||:
 Frog   317 NQMFTEGEEMYLQGSTVWHPYCKETTKAEEKLRLLPPPFGSYKPRQPTRSSSESVYSRPG--SSI 379

  Fly   343 VGGASNGN---------------------------------------FTDTECDRMS-------- 360
            .|  |.|:                                       :..|..||.|        
 Frog   380 PG--SPGHTICAKVDNEILDYKDLAAIPKVKAIYDIERPDLITYEPFYMSTNEDRQSVGEPQSPR 442

  Fly   361 ---SSALSEMYIR--SRTPSFNGSLYSSSRKHYRTVSPGLILREYGRPNAEDISRIYT-YSYLTD 419
               ||..||...|  |.|||..|......|...|:.|.|.|           .|.:|: :||   
 Frog   443 SDRSSVHSERSPRTVSPTPSVEGYQDGRDRVIQRSTSQGSI-----------SSPVYSRHSY--- 493

  Fly   420 APHYLRKPIDPYDKTPLSPHFHRPS---------SYATTASNAGSVAGSRPPS------------ 463
            .|...|.|          .|||||.         .|..|:|.:.:::.|||.|            
 Frog   494 TPTISRSP----------QHFHRPELLRTGGQRLPYMRTSSFSSTLSDSRPNSPFRHHSILHVKG 548

  Fly   464 -RPHSRTRSAMKVLVDAIRSETP----RPK-----SPGMN----------------------NEE 496
             .|:|...|.:....|: |..||    .||     ..|:|                      :|:
 Frog   549 NEPNSGRNSPIPYRPDS-RPPTPTYAQAPKHFHLPDQGINIYRKPPIYKQHDAAALAAQNSESED 612

  Fly   497 PIELSHYPAAKKPPPGEQPKIERDDFPAPPYPY---TDPERRRRYSDTYKGVPASDDEDENVENG 558
            .|:.|.:|||..|.|.|.||||.:.:|.||...   :||.||....:                  
 Frog   613 IIKSSKFPAAHAPAPNEVPKIETEYWPGPPSLAAIGSDPRRRSSVRE------------------ 659

  Fly   559 KPNGKVKNGEE-QQRLQREAEQLEKLNSGIGSAIAKDLKEHAKYRKWKQNNLDPRNASRTPSASK 622
                  ::||| |:|.|...|||.|||||:|..|.|:.||                         
 Frog   660 ------EDGEELQKRRQLHEEQLLKLNSGLGQLILKEEKE------------------------- 693

  Fly   623 EPLYKLRYESPIGASPSRNLDHQKPFYEDEMFDRSTSYRGSLGKSLGNAPSYNAIHSYRSPPKPG 687
                            ||...|....|:                       |....|.::...||
 Frog   694 ----------------SRERTHSSHRYD-----------------------YLQSDSSKTSSLPG 719

  Fly   688 YGFKTTTLPYIRNGF----SSDF----SYGGLGDKTHSTDLSCGKSEASVDSITEGDRRALMGGD 744
            ||         |||.    |:||    |||         |:|.|..|          .::|..|.
 Frog   720 YG---------RNGLHRPVSTDFGHYDSYG---------DISGGVRE----------YQSLPDGH 756

  Fly   745 LPASSTYSGALSYHYPQAGLIRRSLPNM 772
            :||.....|.             |:|||
 Frog   757 VPAMRMDRGV-------------SMPNM 771

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Unc-115bNP_731390.1 LIM1_abLIM 46..97 CDD:188713 26/50 (52%)
LIM2_abLIM 102..157 CDD:188714 28/54 (52%)
LIM3_abLIM 211..262 CDD:188715 32/50 (64%)
LIM4_abLIM 270..326 CDD:188716 34/78 (44%)
ablim1XP_031762145.1 LIM1_abLIM 100..151 CDD:188713 26/50 (52%)
LIM2_abLIM 156..211 CDD:188714 28/54 (52%)
LIM3_abLIM 228..279 CDD:188715 32/50 (64%)
LIM4_abLIM 287..342 CDD:188716 33/55 (60%)
AbLIM_anchor 364..803 CDD:406566 128/566 (23%)
VHP 804..838 CDD:396679
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 85 1.000 Domainoid score I8044
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 345 1.000 Inparanoid score I2266
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001360
OrthoInspector 1 1.000 - - mtm9440
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X852
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.050

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