DRSC/TRiP Functional Genomics Resources

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Protein Alignment eca and Tmed10

DIOPT Version :9

Sequence 1:NP_788616.1 Gene:eca / 41177 FlyBaseID:FBgn0069242 Length:216 Species:Drosophila melanogaster
Sequence 2:NP_081051.1 Gene:Tmed10 / 68581 MGIID:1915831 Length:219 Species:Mus musculus


Alignment Length:209 Identity:69/209 - (33%)
Similarity:115/209 - (55%) Gaps:9/209 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LALILCVLHSACGLYFHISETERKCFIEEVPDETTVIVNYKVELYDPRSNGFMPSSPGIGMHVEV 72
            |.|:|....|..|:.||:....|||..||:..:..|...|::   ..:|.|    :.|:..|:::
Mouse    19 LFLLLLGPSSVLGISFHLPVNSRKCLREEIHKDLLVTGAYEI---TDQSGG----AGGLRTHLKI 76

  Fly    73 RDSDDKIVLSRVYSSQGRISFTSHTPGEHVICMFSNSTAWFSGAQLRVHLDIQVGEHAIDYAHVA 137
            .||...|:.::..:::|:.:||:.......:|..|..|..... || |.||::.|..|.:|..:|
Mouse    77 TDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPD-QL-VILDMKHGVEAKNYEEIA 139

  Fly   138 QKEKLTELQLRIRQLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGFWQ 202
            :.|||..|::.:|:|.|..|.|..:..|.:.|||..|.|:||||:|||::|:.....|:.:..||
Mouse   140 KVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQ 204

  Fly   203 MRHLKSFFEAKKLV 216
            :.:|:.||:||||:
Mouse   205 VFYLRRFFKAKKLI 218

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
ecaNP_788616.1 EMP24_GP25L 20..211 CDD:279450 60/190 (32%)
Tmed10NP_081051.1 Required for interaction with STX17. /evidence=ECO:0000250 1..142 36/131 (27%)
EMP24_GP25L 31..213 CDD:279450 60/190 (32%)
Required for TMED10 and TMED2 cis-Golgi network localization. /evidence=ECO:0000250 147..178 11/30 (37%)
Interaction with COPG1. /evidence=ECO:0000250 204..219 8/15 (53%)
Interaction with ARF1 and IL1B. /evidence=ECO:0000250|UniProtKB:P49755 207..219 7/12 (58%)
COPI vesicle coat-binding. /evidence=ECO:0000255 211..219 6/8 (75%)