DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eca and tmed5

DIOPT Version :10

Sequence 1:NP_788616.1 Gene:eca / 41177 FlyBaseID:FBgn0069242 Length:216 Species:Drosophila melanogaster
Sequence 2:XP_073788325.1 Gene:tmed5 / 393374 ZFINID:ZDB-GENE-040426-1302 Length:226 Species:Danio rerio


Alignment Length:205 Identity:42/205 - (20%)
Similarity:82/205 - (40%) Gaps:33/205 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 FHISETERKCFIEEVPDETTVIVNYKVELYDPRSNGFMPSSPGIGMHVEVR-DSDDKIVLSRVYS 86
            |.::...|:||.:.:..:.::.:.|:|             ..|..:.|:.: :|....:::..|.
Zfish    35 FTLAAGRRECFFQTMKKDASLEIEYQV-------------LDGASLDVDFQLNSPSGHIIASDYR 86

  Fly    87 SQGRISFTSHTPGEHVICMFSNSTAWFSGAQLRVHL------DIQVGEHAIDYAHVAQKEKLTEL 145
            ....:.......|:::.| |.|:   ||....:|..      ::...|.:.|:....|...|  |
Zfish    87 KSDGVHTVETEEGDYMFC-FDNT---FSAVSEKVIFFELILDNMGEDEESEDWKAYVQGADL--L 145

  Fly   146 QLRIRQLLDQVEQITKE-------QNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGFWQM 203
            .:::..::|.:..:...       |...|..|.|.|:..||...||..||....:|:|.:...|:
Zfish   146 DMKLEDIMDTINNVKSRLGKSLQIQTLLRAFEARDRNLQESNYERVNLWSCTNVLVMVIVSGVQV 210

  Fly   204 RHLKSFFEAK 213
            ..|:|.||.|
Zfish   211 YLLRSLFEDK 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ecaNP_788616.1 EMP24_GP25L 20..211 CDD:426051 39/201 (19%)
tmed5XP_073788325.1 None

Return to query results.
Submit another query.