DRSC/TRiP Functional Genomics Resources

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Protein Alignment eca and Tmed1

DIOPT Version :10

Sequence 1:NP_788616.1 Gene:eca / 41177 FlyBaseID:FBgn0069242 Length:216 Species:Drosophila melanogaster
Sequence 2:XP_006242706.1 Gene:Tmed1 / 315461 RGDID:1311679 Length:262 Species:Rattus norvegicus


Alignment Length:256 Identity:55/256 - (21%)
Similarity:98/256 - (38%) Gaps:54/256 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SLALILCVLHSACGL-------------YFHISETERKCFIEEVPDETTVIVNYKVE-------- 50
            ::||.|.:|..|.|:             .|.:....::||.:..|...::...|:.:        
  Rat     7 AVALALWLLLPAVGVGEAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEYQFDNSRVEVEN 71

  Fly    51 --------------LYDPRSNGFMPSSPGIGMHVE-VRDSDDKIVLSRVYSSQGRISFTSHT--- 97
                          ||..:.||......|.|:.|: ..:|...::|    .|:.|.:...||   
  Rat    72 RLLQVALQSPQALLLYPKQRNGIFVVIGGAGLDVDFTLESPQGVLL----VSESRKADGVHTVEP 132

  Fly    98 --PGEHVICMFSNSTAWFSGAQLRVHL---DIQVGEHAIDYAHVAQKEKLTELQLR-----IRQL 152
              .|::.:| |.||.:..|...:...|   ..|..|....:|...:.|::.::::.     |..:
  Rat   133 TEAGDYRLC-FDNSFSTISEKLVFFELIFDSFQDEEEVEGWAEAVEPEEMLDVKMEDIKESIETM 196

  Fly   153 LDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGFWQMRHLKSFFEAK 213
            ..::|:..:.....|..|.|.|:..|....||.:||.|...||:.:...|:..||.||..|
  Rat   197 RTRLERSIQMLTLLRAFEARDRNLQEDNLERVNFWSAANVAVLLLVAVLQVCTLKRFFHDK 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ecaNP_788616.1 EMP24_GP25L 20..211 CDD:426051 48/239 (20%)
Tmed1XP_006242706.1 EMP24_GP25L 33..254 CDD:426051 46/225 (20%)

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