DRSC/TRiP Functional Genomics Resources

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Protein Alignment eca and Tmed4

DIOPT Version :9

Sequence 1:NP_788616.1 Gene:eca / 41177 FlyBaseID:FBgn0069242 Length:216 Species:Drosophila melanogaster
Sequence 2:XP_006251506.1 Gene:Tmed4 / 305502 RGDID:1306319 Length:227 Species:Rattus norvegicus


Alignment Length:215 Identity:148/215 - (68%)
Similarity:177/215 - (82%) Gaps:3/215 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QFISLALILCVLHSACGLYFHISETERKCFIEEVPDETTVIVNYKVELYDPRSNGFMPSSPGIGM 68
            :|:.|.|.:|.. .|.||||||.|||::|||||:||||.||.||:.:::|.:...|:||:||:||
  Rat    14 RFVLLVLTVCAA-GARGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGM 77

  Fly    69 HVEVRDSDDKIVLSRVYSSQGRISFTSHTPGEHVICMFSNST--AWFSGAQLRVHLDIQVGEHAI 131
            ||||:|.|.|:||||.|.|:||.:|||||||:|.||:.||||  |.|:|.:|||||||||||||.
  Rat    78 HVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVHLDIQVGEHAN 142

  Fly   132 DYAHVAQKEKLTELQLRIRQLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLV 196
            :|..:|.|:||||||||.||||||||||.|||:||||||||||.||||||.||||||:||||:|:
  Rat   143 NYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILI 207

  Fly   197 CMGFWQMRHLKSFFEAKKLV 216
            ..|.||||||||||||||||
  Rat   208 LTGIWQMRHLKSFFEAKKLV 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ecaNP_788616.1 EMP24_GP25L 20..211 CDD:279450 136/192 (71%)
Tmed4XP_006251506.1 EMP24_GP25L 29..222 CDD:279450 136/192 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335259
Domainoid 1 1.000 291 1.000 Domainoid score I1473
eggNOG 1 0.900 - - E1_KOG1690
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5308
Inparanoid 1 1.050 307 1.000 Inparanoid score I2546
OMA 1 1.010 - - QHG53581
OrthoDB 1 1.010 - - D1294924at2759
OrthoFinder 1 1.000 - - FOG0001070
OrthoInspector 1 1.000 - - mtm8908
orthoMCL 1 0.900 - - OOG6_102210
Panther 1 1.100 - - LDO PTHR22811
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X178
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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