DRSC/TRiP Functional Genomics Resources

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Protein Alignment eca and TMED3

DIOPT Version :10

Sequence 1:NP_788616.1 Gene:eca / 41177 FlyBaseID:FBgn0069242 Length:216 Species:Drosophila melanogaster
Sequence 2:NP_031390.1 Gene:TMED3 / 23423 HGNCID:28889 Length:217 Species:Homo sapiens


Alignment Length:321 Identity:68/321 - (21%)
Similarity:108/321 - (33%) Gaps:97/321 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 SWLQNITSETRATNC----KVYKLSIDEHGDF--AYPRPLEED---PMGCYKFPRITRSIRGQFP 164
            |||         ..|    .|::..:...||.  .|..||.:.   |...:.:|.:..|      
Human    55 SWL---------VGCLFTIAVFQPPVQVLGDAGKVYIAPLRDTANLPCPLFLWPNMVLS------ 104

  Fly   165 DLRYYN------------FPNGNEGIESFPPSYRIPEWQAHAGWLGPRPFFRVKWGSPYPFQPSS 217
            ::|:|.            |.:|.:..|...|.|:           |.....|......|..|.|:
Human   105 EMRWYRPGHLPRTQAVHVFRDGQDRDEDLMPEYK-----------GRTALVRDAHKESYILQISN 158

  Fly   218 V-LESN---------GNRSRR-------ARFASKPVIPKSFRCDHMPHYHYVFPLNMPLYCREL- 264
            | ||..         ||.||.       |...|.|.|       |:..|...:   :.|.|:.: 
Human   159 VRLEDRGLYQCQVWVGNSSREDNVTLQVAVLGSDPYI-------HVKGYDAGW---IELLCQSVG 213

  Fly   265 ------TVFNHNT------VSEYNG-DGSSFHRDASSSSLSNNQPEDLVIPFISRVALKVNQPFD 316
                  |.:...|      :||.:. |.:...|.|.||.:.:|...: |...|...||...:...
Human   214 WFPKPWTEWRDTTGRALLSLSEVHSLDENGLFRTAVSSRIRDNALGN-VSCTIHNEALGQEKTTA 277

  Fly   317 MFPGIP---TWFFQSMLNNYYLPI-GLLTFADFLLLAMYRCIELHLLGER----DGLVKDN 369
            |..|.|   :....::..:..||: |||......|:...:..:..||.|:    :.|::|:
Human   278 MIIGAPERGSLSSPAVALSVVLPVLGLLILLGIWLICKQKKSKEKLLYEQAMEVENLLEDH 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ecaNP_788616.1 EMP24_GP25L 20..211 CDD:426051 22/122 (18%)
TMED3NP_031390.1 EMP24_GP25L 28..205 CDD:426051 38/185 (21%)
COPI vesicle coat-binding. /evidence=ECO:0000255 204..217 2/15 (13%)
COPII vesicle coat-binding. /evidence=ECO:0000255 204..205 0/3 (0%)

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