DRSC/TRiP Functional Genomics Resources

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Protein Alignment eca and tmed-4

DIOPT Version :10

Sequence 1:NP_788616.1 Gene:eca / 41177 FlyBaseID:FBgn0069242 Length:216 Species:Drosophila melanogaster
Sequence 2:NP_507861.1 Gene:tmed-4 / 180307 WormBaseID:WBGene00013360 Length:211 Species:Caenorhabditis elegans


Alignment Length:209 Identity:148/209 - (70%)
Similarity:177/209 - (84%) Gaps:1/209 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LALILCVLHSACGLYFHISETERKCFIEEVPDETTVIVNYKVELYDPRSNGFMPSSPGIGMHVEV 72
            |..:|.:...|..|||||:|||:||||||:||||.|..||||:||||.:.|: ...|.|||||||
 Worm     4 LIALLSLATYADSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGY-GDYPNIGMHVEV 67

  Fly    73 RDSDDKIVLSRVYSSQGRISFTSHTPGEHVICMFSNSTAWFSGAQLRVHLDIQVGEHAIDYAHVA 137
            :|.:||::||::|:::||.:|||:||||||||::|||||||:|||||||||||.|:||.|||.:|
 Worm    68 KDPEDKVILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQAGDHAQDYAQIA 132

  Fly   138 QKEKLTELQLRIRQLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVVLVCMGFWQ 202
            ||:||.|||||||||||||:|||||||||||||||||.|||||||||.:||:||.|||...|.||
 Worm   133 QKDKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYWSIAQVVVLAITGAWQ 197

  Fly   203 MRHLKSFFEAKKLV 216
            ||||:.||||||||
 Worm   198 MRHLRGFFEAKKLV 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ecaNP_788616.1 EMP24_GP25L 20..211 CDD:426051 138/190 (73%)
tmed-4NP_507861.1 EMP24_GP25L 16..206 CDD:426051 138/190 (73%)

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