DRSC/TRiP Functional Genomics Resources

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Protein Alignment eca and Tmed4

DIOPT Version :9

Sequence 1:NP_788616.1 Gene:eca / 41177 FlyBaseID:FBgn0069242 Length:216 Species:Drosophila melanogaster
Sequence 2:NP_598781.1 Gene:Tmed4 / 103694 MGIID:1915070 Length:227 Species:Mus musculus


Alignment Length:217 Identity:149/217 - (68%)
Similarity:178/217 - (82%) Gaps:7/217 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QFISLALILCVLHSAC--GLYFHISETERKCFIEEVPDETTVIVNYKVELYDPRSNGFMPSSPGI 66
            :|..|.|.:|   :||  ||||||.|||::|||||:||||.||.||:.:::|.:...|:||:||:
Mouse    14 RFGLLVLTVC---AACARGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGL 75

  Fly    67 GMHVEVRDSDDKIVLSRVYSSQGRISFTSHTPGEHVICMFSNST--AWFSGAQLRVHLDIQVGEH 129
            ||||||:|.|.|:||||.|.|:||.:|||||||:|.||:.||||  |.|:|.:||||||||||||
Mouse    76 GMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVHLDIQVGEH 140

  Fly   130 AIDYAHVAQKEKLTELQLRIRQLLDQVEQITKEQNYQRYREERFRHTSESTNSRVLWWSLAQTVV 194
            |.:|..:|.|:||||||||.||||||||||.|||:||||||||||.||||||.||||||:||||:
Mouse   141 ANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVI 205

  Fly   195 LVCMGFWQMRHLKSFFEAKKLV 216
            |:..|.||||||||||||||||
Mouse   206 LILTGIWQMRHLKSFFEAKKLV 227

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
ecaNP_788616.1 EMP24_GP25L 20..211 CDD:279450 136/192 (71%)
Tmed4NP_598781.1 EMP24_GP25L 29..222 CDD:366467 136/192 (71%)
COPI vesicle coat-binding. /evidence=ECO:0000255 220..227 6/6 (100%)