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Protein Alignment Scm and Sfmbt1

DIOPT Version :10

Sequence 1:	NP_731385.1	Gene:	Scm / 41168	FlyBaseID:	FBgn0003334	Length:	877	Species:	Drosophila melanogaster
Sequence 2:	NP_113835.2	Gene:	Sfmbt1 / 58967	RGDID:	61999	Length:	863	Species:	Rattus norvegicus

Alignment Length:	915	Identity:	209/915 - (22%)
Similarity:	323/915 - (35%)	Gaps:	243/915 - (26%)

- Green bases have known domain annotations that are detailed below.

  Fly    17 APGASTNATSSASASASSTSTSASPGSTTSPASTQRQRGRPAKRATCTWCGEGKLPLQYVLPTQT 81
            ||....:..|..||....|.|.|.              |.|.  |.......|:.||..:.|
  Rat   119 APEGIRDKVSDWSAFLQRTLTGAC--------------GPPV--ALLEGLRNGRNPLDLIAP--- 164

  Fly    82 GKKEFCSETCIAEFRKAYSKGACTQCDNVIRDGAPNKEFCSIMCMNKHQKKNCSTRHSG------ 140
            |.:..|.     :||.:.|....|..:|:  .|....::..:            .||.|
  Rat   165 GSRLECQ-----DFRDSVSTWIVTVVENI--GGRLKLQYEGL------------ERHDGFEHWLY 210

  Fly   141 ---------GSASGKGLAESERKLLASGAPAPTGPFQYESFHVFDWDAYL----EETGSEAAPAK 192
                     |.|:.:|....        .|......:.|:    ||...|    ||   |..|:.
  Rat   211 YLDPFLHHIGWAAQQGYELQ--------PPLAIRHLKNEA----DWQEILARVKEE---EPLPSY 260

  Fly   193 CFKQAQNPPNNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRL-RLDG----SDSQNDFWRLV 252
            .||..|....::|.|.|||||:||.:......||:..|...:..| .:|.    ..::..|....
  Rat   261 LFKDKQVIRTHEFSINMKLEAVDPWSPFGISPATIAKVFDDKYFLVEIDDLRPEDHARRSFVCHA 325

  Fly   253 DSTEIHAIGHCEKNGGMLQPPLGFRMNASSWPGYL--CKILNNAMVAPEEIFQPEPPEPEENLFK 315
            :|..|..:....|||..:.||.|||.....|..||  |    .|..||::.|   |....|:.||
  Rat   326 NSPGIFPVQWSLKNGLHINPPPGFRSQDFDWADYLKQC----GAEAAPQKCF---PQSVSEHQFK 383

  Fly   316 VGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAF-DYWCNYRSRDIFPAGWCARSCHPM 379
            ...|||||:...|:.:..|||.|::...:.:..:|.:... ::..:..|.:|||.|||..:.||:
  Rat   384 ENMKLEAVNPLFPEEVSIATVTAVRGSYLWLQLEGSKKPVPEFIVSVESMNIFPLGWCETNGHPL 448

  Fly   380 QPP----GHK---------------SRMDSSSSKQRCPRPRYTVVAESEAMVPASPATAHFHPNC 425
            ..|    |||               ||......|.:...| ::|:...:...|    ..:|:..|
  Rat   449 STPRRARGHKLRKIAVVQPEKQILSSRTVHEGLKNQLNSP-HSVMINGKYCCP----KIYFNHRC 508

  Fly   426 KGGPFINN---SKLPCMVTGPTYQTLAKLCLQEVL-----AASTDTQQLSKLLFALE------GD 476
            ..||::|.   ::||..| ||..   ..|.|:|||     ||...::.|.:|....:      |:
  Rat   509 FSGPYLNKGRIAELPQCV-GPGN---CVLVLREVLTLLINAAYKPSRVLRELQLDKDSVWHGCGE 569

  Fly   477 VHIVTAAGKNF--TVKIPSPMRMKDDESLAQFIETLCTTCRACANLISLVHETEEC-KKCANSRK 538
            |......||::  ||:|     ::..:.:.:|....|.....|.||.......:.| :.|:...|
  Rat   570 VLKAKYKGKSYRATVEI-----VRTADRVTEFCRQTCIKLECCPNLFGPRMVLDTCSENCSVLTK 629

  Fly   539 RQLTQSATPPSSPVLADKRNRQSNSATTSPSEKIIKQELAVKSPVESKSKTSTNNGKEPASQQNS 603
            .:.|.        ....|:|::.                                |:.|....|.
  Rat   630 TKYTH--------YYGKKKNKRI--------------------------------GRPPGGHSNL 654

  Fly   604 NHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALRKVRFQHHANTNTNSSATNGNQDTSQT 668
            :.:|...:....:..|..|.|.:.:.|:..                 ||...|...:|.:|....
  Rat   655 SCALKKTSKRRKRRKNIFVHKKKRSSASVD-----------------NTPVGSPQGSGGEDEDDA 702

  Fly   669 THVSTSHCSSSSTSSSTSLAGGSANTSTIGKYLAPLVAEVHPEQANVKPSNSYYKSPTTLSSSAS 733
            ........:..|||....                    |:| |::.|....|...|||....|..
  Rat   703 DDGDDDSLTEGSTSEQQD--------------------ELH-EESEVSEKKSCSPSPTQSEMSTP 746

  Fly   734 LPTSVSTPFTGCQSASSTALAAGGVTAAKAATAPAGAAATAGASPSYTAITSPVSTPTSALANSH 798
            ||....   |..:.|.:::|:.|                 ....||...|...|.      ...|
  Rat   747 LPPDTQ---TDKREAQTSSLSDG-----------------ENKPPSPKEIRIEVD------ERLH 785

  Fly   799 LRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLLLNSEMMMKYMGLKLGPALKICN 863
            |.|.|:.|::.:|:::|.|.|  .|....:|...||||:|||||....:.:.|.||||||:|:|:
  Rat   786 LDSNPLKWSVADVVRFIRSTD--CAPLARIFLDQEIDGQALLLLTLPTVQECMDLKLGPAIKLCH 848

  Fly   864 LVNKV 868
            .:.::
  Rat   849 HIERI 853

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.