DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scm and l3mbtl2

DIOPT Version :9

Sequence 1:NP_001247006.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:NP_956326.1 Gene:l3mbtl2 / 568473 ZFINID:ZDB-GENE-030131-8713 Length:805 Species:Danio rerio


Alignment Length:386 Identity:101/386 - (26%)
Similarity:160/386 - (41%) Gaps:119/386 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 FKIGMKLEALDPRNVTSTCIATV----------VGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHA 259
            ||.|||:||:||.|:.:.|:|:|          ||:.|..:.   ||||     |....::. ||
Zfish   506 FKEGMKIEAIDPLNLGNICVASVRKVLLDGYIMVGIDGVEIG---DGSD-----WFCYHASS-HA 561

  Fly   260 I---GHCEKNGGMLQPPLGFRMNASSWPGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLE 321
            |   |:||.|...|..|.|:.....:||.||.:  ..|:.||:.:|.   .:...:.|..|.|||
Zfish   562 ILPVGYCENNDIPLTVPPGYDQATFTWPVYLEE--TGAVAAPQRLFN---TDDVGHGFTSGMKLE 621

  Fly   322 AVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPMQPPGHKS 386
            |||...|:|:|.|||.......:.:.||||...||.|.:.:|.:|:|.|||..:.:.:|||    
Zfish   622 AVDLMEPRLVCVATVRRCVGRLLLLHFDGWEPEFDQWVDCQSPEIYPVGWCEITGYQLQPP---- 682

  Fly   387 RMDSSSSKQRCPRPRYTVVAESEAMVPASP-ATAHFHPNCKGGPFINNSKLPCMVTGPTYQTLAK 450
                                    :.|..| ...|.|.:.|..||....|...:      :..||
Zfish   683 ------------------------IGPEPPQGQEHSHASKKAKPFKGKRKRRFL------RKNAK 717

  Fly   451 LCLQEVLAASTDTQQLSKLLFALEGDVHIVTAAGKNFTVKIPSPMRMK---DDESLAQFIETLCT 512
            :.|:      |.|.:.::::.:.|       ||.   |...||.:::|   ::|.:|..::    
Zfish   718 INLK------TQTNENTEMIQSQE-------AAN---TSDKPSTLQIKTEPEEEVIAVRVK---- 762

  Fly   513 TCRACANLISLVHETEECKKCANSRKRQLTQSATPPSSPVLADKRNRQSN--SATTSPSEK 571
                       |.|.|                     :|:|:..::::|:  :.||...||
Zfish   763 -----------VEELE---------------------TPILSSAQSKESHQGALTTFKREK 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_001247006.1 zf-FCS 55..95 CDD:283998
MBT 178..273 CDD:214723 29/80 (36%)
MBT <312..382 CDD:214723 28/69 (41%)
DUF3588 418..524 CDD:288954 20/108 (19%)
SAM_Scm 800..870 CDD:188977
SAM 806..867 CDD:197735
l3mbtl2NP_956326.1 THAP 4..89 CDD:283206
MBT 257..357 CDD:214723
MBT 366..467 CDD:214723
MBT 511..582 CDD:280910 27/79 (34%)
MBT 591..682 CDD:214723 34/95 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3766
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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