DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scm and mbtd1

DIOPT Version :10

Sequence 1:NP_731385.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:XP_005169539.3 Gene:mbtd1 / 568340 ZFINID:ZDB-GENE-060810-138 Length:705 Species:Danio rerio


Alignment Length:226 Identity:81/226 - (35%)
Similarity:122/226 - (53%) Gaps:13/226 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 GSEAAPAKCFKQAQNPPNND--FKIGMKLEALDPRNVTSTCIATVVGVLG-SRLRLRLDGSD-SQ 245
            |...||::.|.:.::...|.  ||.||||||:||.|:::.|:|||..||. ..|.:.:|||: :.
Zfish   385 GQMDAPSQLFLKIKDVDQNGDWFKDGMKLEAIDPLNLSAICVATVRKVLADGYLMIGIDGSEAAD 449

  Fly   246 NDFWRLVDST--EIHAIGHCEKNGGMLQPPLGFRMNASSWPGYLCKILNNAMVAPEEIFQPEPPE 308
            ...|....||  .|..:|.||.|...|.||.|.......|..||.:|  .::.||.::|..:.| 
Zfish   450 GSDWFCYHSTSPSIFPVGFCEINSIELTPPRGCTKLPFKWFDYLREI--GSIAAPVKLFNKDVP- 511

  Fly   309 PEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAGWCA 373
              .:.|:||.||||||...|:|:|.|||..|....:.:.||||...:|.|.:..|.|::|.|||.
Zfish   512 --NHGFRVGMKLEAVDLMEPRLVCVATVTRIVHRLLRIHFDGWEDEYDQWVDCESPDLYPIGWCQ 574

  Fly   374 RSCHPMQPPGHKSRMDS--SSSKQRCPRPRY 402
            .:.:.:|||..::..::  :.|||:....:|
Zfish   575 LTGYQLQPPAAQTTREAPPNVSKQKKKAAQY 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_731385.1 zf-FCS 58..95 CDD:428958
MBT_dScm_rpt1 196..294 CDD:439097 38/103 (37%)
MBT_dScm_rpt2 312..383 CDD:439100 30/70 (43%)
SLED 418..522 CDD:463469
SAM_Scm 800..870 CDD:188977
mbtd1XP_005169539.3 None
Blue background indicates that the domain is not in the aligned region.

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