DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scm and l3mbtl1b

DIOPT Version :9

Sequence 1:NP_001247006.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:XP_009290632.1 Gene:l3mbtl1b / 559572 ZFINID:ZDB-GENE-100922-38 Length:786 Species:Danio rerio


Alignment Length:998 Identity:206/998 - (20%)
Similarity:284/998 - (28%) Gaps:455/998 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 NATSSASASASSTSTSASPGSTTSPAST--QRQRG-----------------------RPAKRAT 62
            |.||:.:|...|.:..    .|::||||  |||.|                       .|....|
Zfish    80 NTTSNQTAKIQSNTDH----QTSTPASTEPQRQAGGDSSTVDNPIINTVPNAIVPVTEAPINCRT 140

  Fly    63 CTWCGEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYSKGACTQCDNVIRDGAPNKEFCSIMCMN 127
            |...|..:..||       ||  |||.:|:..     |.|..|          |.:.|.......
Zfish   141 CGLSGSRESFLQ-------GK--FCSASCVQP-----SSGRST----------PAEAFEGERLGK 181

  Fly   128 KHQKKNCSTRHSGGSASGKGLAESERKLLASGAPAP------TGPFQYESFHVFDWDAYLEETGS 186
            :.:||......|..........|.||...:.|..|.      |.|...:.  .:.|..||||..:
Zfish   182 RVRKKKKMFMESEDEEEENIEEEEERVKSSKGRRAAKVARLVTAPLVKKK--TWSWSVYLEEERA 244

  Fly   187 EAAPAKCFKQAQNPP--NNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFW 249
            .|||.|.||:.|:.|  .|.||:|||||.|||.:....|:.||..|.|.|:||..||.....|||
Zfish   245 AAAPLKLFKEHQSFPQSRNGFKVGMKLEGLDPCHPALFCVLTVAEVQGYRIRLHFDGYPECYDFW 309

  Fly   250 RLVDSTEIHAIGHCEKNGGMLQPPLGFRMNASSW------------PGYLCKILNNAM------- 295
            ...||.::...|.|||....|..|.|.|....:|            |.:|.|.||.::       
Zfish   310 VNADSWDVKPPGWCEKTSLKLLLPKGCRDGEFNWNTYVKNCRGQLAPKHLFKSLNTSVTPSGFRA 374

  Fly   296 ----------------------------------------------------------------- 295
                                                                             
Zfish   375 GMKLEAVDRKNLSDICVATIAAAVDNRLLIHIDHCDDTHDYWCDASSPYIHPVGYCEEVKLTLTT 439

  Fly   296 ----------------------VAPEEIFQPEPPEPEENLFKVGQKLEAVDKKNPQLICCATVDA 338
                                  .||...|:..||..    |:||.|||||||:||.||..||:..
Zfish   440 PAEYKHLKGFSWEKYLEETGTQAAPARAFKQRPPHG----FQVGVKLEAVDKRNPMLIRVATISD 500

  Fly   339 IKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPMQ----------PPGHKSRMDSSSS 393
            .::.:|.:.||||...:|||.:..|.::.|.|||.::.||:|          |||          
Zfish   501 TEEHRIKIHFDGWSDEYDYWLDADSPELHPVGWCQKTGHPLQHPNGTRDSPVPPG---------- 555

  Fly   394 KQRCPRPRYTVVAESEAMVPASPATAHFHPNCKGGPFINNSKLPCMVTGPTYQT--LAKLCLQEV 456
             |.||.                       |.|.|...|.         ||.|.|  .|..|....
Zfish   556 -QGCPT-----------------------PGCNGVGHIR---------GPRYGTHYTAVSCPYSD 587

  Fly   457 LAASTDTQQLSKLLFALEGDVHIVTAAGKNFTVKIPSPMRMKDDESLAQFIETLCTTCRACANLI 521
            |..:.|.....:|             :|:. .|.|..|.|.:..|:|.|                
Zfish   588 LNFNKDGLVPDRL-------------SGER-PVTISGPPRHRRAETLTQ---------------- 622

  Fly   522 SLVHETEECKKCANSRKRQLTQSATPPSSPVLADKRNRQSNSATTSPSEKIIKQELAVKSPVESK 586
                            ..|.|.||:.|..|         ..:....|..:.:::.:...      
Zfish   623 ----------------THQPTSSASTPEPP---------DTTTDACPQARPVREHVVTA------ 656

  Fly   587 SKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQAL----RKVRFQ 647
                                      :|.|......:|.|.:|.::......:::    .:.|||
Zfish   657 --------------------------AAPKCVKAPQVKQEGDGKDSLQQFLHESVFCGWEQPRFQ 695

  Fly   648 HHANTNTNSSATNGNQDTSQTTHVSTSHCSSSSTSSSTSLAGGSANTSTIGKYLAPLVAEVHPEQ 712
                                                                    |..|.|   
Zfish   696 --------------------------------------------------------LCWEKH--- 701

  Fly   713 ANVKPSNSYYKSPTTLSSSASLPTSVSTPFTGCQSASSTALAAGGVTAAKAATAPAGAAATAGAS 777
                              ...||.::                  |:||.:.:             
Zfish   702 ------------------GKLLPEAL------------------GLTAKRVS------------- 717

  Fly   778 PSYTAITSPVSTPTSALANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLLL 842
                                       .|..|||..::.... ....|...|||.:|||:|.|||
Zfish   718 ---------------------------KWNTEEVASFVRGLP-GCREHAPTFRKEQIDGEAFLLL 754

  Fly   843 NSEMMMKYMGLKLGPALKICNLV 865
            ....::|.:.:||||||||.|.:
Zfish   755 TQSDIVKILSIKLGPALKIYNSI 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_001247006.1 zf-FCS 55..95 CDD:283998 13/62 (21%)
MBT 178..273 CDD:214723 43/96 (45%)
MBT <312..382 CDD:214723 32/79 (41%)
DUF3588 418..524 CDD:288954 21/107 (20%)
SAM_Scm 800..870 CDD:188977 25/66 (38%)
SAM 806..867 CDD:197735 25/60 (42%)
l3mbtl1bXP_009290632.1 MBT 238..333 CDD:214723 43/94 (46%)
MBT 346..440 CDD:214723 5/93 (5%)
MBT 452..544 CDD:214723 37/95 (39%)
zf-C2HC 557..584 CDD:279824 11/58 (19%)
SAM_Scm-like-3MBT3,4 716..781 CDD:188981 25/103 (24%)
SAM 716..781 CDD:197735 25/103 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3766
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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