DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scm and l(3)mbt

DIOPT Version :9

Sequence 1:NP_001247006.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:NP_733209.1 Gene:l(3)mbt / 43288 FlyBaseID:FBgn0002441 Length:1477 Species:Drosophila melanogaster


Alignment Length:946 Identity:209/946 - (22%)
Similarity:325/946 - (34%) Gaps:278/946 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SSTSSGSNS---------AAPGASTNATSSASASASSTSTSASPGSTTSPASTQRQRGRPAKRAT 62
            ||:||||::         |.|..|:....:|. .|:....:.||.|.|:.......:.....:  
  Fly   606 SSSSSGSHASEMSPPPKLADPKPSSPPAKNAK-KANDHDANPSPSSKTNDFKKSMMQNLNMLK-- 667

  Fly    63 CTWCGEGKLPLQYVLPTQTGKKEF-------CSETC------IAEF-RKAYSK-----GACTQ-- 106
              |.|:....||    ..|.:.|.       .:|.|      .|.| |..|.:     .||..  
  Fly   668 --WRGQQPANLQ----NSTVRFELNEFNFLQINERCQPRQGPAAYFERPLYDRPGRRPSACVHPL 726

  Fly   107 ---CDNVIRDG------APNKEFCSIMCMNKHQKKNC--STR-----------HSGGSASG---- 145
               |......|      ||:  |||:.|:.:.||:..  ||:           .:.|:|..    
  Fly   727 LYLCQRCNFHGPAADFLAPH--FCSVGCVRRSQKRRLPQSTQKESKISRTQLEQTAGTAPDLPQK 789

  Fly   146 --------KGLAESERKLLASGAPAPTGPFQYESFHVFDWDAYLEETGSE-AAPAKCFKQAQNPP 201
                    |.|:..:.:|.......|..||:        |..||:..|.: |||...|.......
  Fly   790 RQTNYKPHKSLSAIQEQLQQRQKDKPRKPFR--------WSEYLKSKGKDVAAPIHLFLNPFPIS 846

  Fly   202 NNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKN 266
            .|.|:|||||||:||.|.:..|:.::|.|.|.||:|..||..|..|||...||.:|...|.|::.
  Fly   847 PNCFEIGMKLEAIDPENCSLFCVCSIVEVRGYRLKLSFDGYSSMYDFWVNADSQDIFPPGWCDET 911

  Fly   267 GGMLQPPLGFRMNASSWPGYLCKILNNAMVAPEEIF---QPEPPEPEENLFKVGQKLEAVDKKNP 328
            ..:||.|..:.....||..||.|  .....||..:|   ..:......|.|.||..|||.|..:.
  Fly   912 ARVLQAPKDYNSERFSWSRYLVK--TGGKAAPRALFGHLNMQQQMDVRNGFAVGMHLEAEDLNDT 974

  Fly   329 QLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPMQPPGHKSRMDSSSS 393
            ..||.|||..|.|::|.|.||||...:|.|.:..|..|.|.||            |:.|      
  Fly   975 GKICVATVTDILDERIRVHFDGWDDCYDLWVHITSPYIHPCGW------------HEGR------ 1021

  Fly   394 KQRCPRPRYT---------------VVAESEAMVPASPATAHFHPNCKGGPFINNSKLPCMVTGP 443
            :|....|.|.               :.|..|...|..|.........:    :.:.:.||::...
  Fly  1022 QQLIVPPDYQKSAFIWDDYISEVGGMAASKELFTPRQPMEYQERMKLE----VVDQRNPCLIRPA 1082

  Fly   444 TYQTLAKLCLQEVLAASTDTQQLSKLLFALEGDVHIVTAAG--KNFTVKIPSPMRMKDDESLAQF 506
            |..|.....:|..|....     ::..|.||.|...:...|  :..:.::.:|......:|:   
  Fly  1083 TVVTRKGYRVQLHLDCWP-----TEYYFWLEDDSPDLHPIGWCEATSHELETPPGYLQPKSV--- 1139

  Fly   507 IETLCTTCRACANLISLVHETEECKKCANSRKRQLTQSATPPSSPVLADKRNRQSNSATTSPSEK 571
                    ..|        :.|.|:...|:::..|...|.....| .|.:..||..|.|..| .:
  Fly  1140 --------MPC--------DVEGCRGFGNAKRFNLNVHALRECCP-YAPENWRQWRSKTVKP-PR 1186

  Fly   572 IIKQELAVKSPVESKSKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSS 636
            :..:.  ::.....|:|.:.:..|:...:.               |..::|.        .:.:.
  Fly  1187 VAPEN--IRRGWAKKTKRACSEAKQAIKED---------------SQQEIVY--------PKVAE 1226

  Fly   637 TTQALRKVRFQHHANTNTNSSATNGNQDTSQTTHVSTSHCSSSSTSSSTSLAGGSANTSTIGKYL 701
            ..||.||                             ||.|..........:.....         
  Fly  1227 VVQAKRK-----------------------------TSPCEEKVVKKQKQMQKEED--------- 1253

  Fly   702 APLVAEVHPEQANVKPSNSYYK--SPTTLSSSASLPTSVSTPFTGCQSASSTALAAGGVTAAKAA 764
                ||..|::.::..:.|:.|  .|..|                                    
  Fly  1254 ----AEQVPDERSLAIARSFVKDYGPQFL------------------------------------ 1278

  Fly   765 TAPAGAAATAGASPSYTAITSPVSTPTSALANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLF 829
                         |:|.     :....||.....:|:.|:.||..:|.:|||...:|..:...:|
  Fly  1279 -------------PNYR-----LWQLNSAFKLDDVRTNPLHWTSWDVCEYIERALDSTDIAKVIF 1325

  Fly   830 RKHEIDGKALLLLNSEMMMKYMGLKLGPALKICNLV 865
             :.:|||:|||:|..:.:..|:.||:|||:|:.:|:
  Fly  1326 -EQDIDGRALLMLGRKELDTYLKLKVGPAVKLYSLI 1360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_001247006.1 zf-FCS 55..95 CDD:283998 9/52 (17%)
MBT 178..273 CDD:214723 39/95 (41%)
MBT <312..382 CDD:214723 28/69 (41%)
DUF3588 418..524 CDD:288954 14/107 (13%)
SAM_Scm 800..870 CDD:188977 25/66 (38%)
SAM 806..867 CDD:197735 23/60 (38%)
l(3)mbtNP_733209.1 MBT 822..918 CDD:214723 39/95 (41%)
MBT 929..1028 CDD:214723 37/118 (31%)
MBT 1038..1130 CDD:214723 15/100 (15%)
SAM_PNT 1279..1366 CDD:280377 29/88 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453495
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12247
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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