DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scm and l3mbtl3

DIOPT Version :9

Sequence 1:NP_001247006.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:NP_001232893.1 Gene:l3mbtl3 / 403075 ZFINID:ZDB-GENE-040724-127 Length:523 Species:Danio rerio


Alignment Length:466 Identity:136/466 - (29%)
Similarity:200/466 - (42%) Gaps:101/466 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 ATSSASASASSTSTSAS----PGSTTSPAS------------------TQRQRGRPAKRATCTWC 66
            |:|.|||:|.......:    .|..|.|.|                  .:.:||:.| .||.||.
Zfish     2 ASSGASAAAPEFDVYGAMDWKDGVGTLPGSELKFRVNEFGVLEVITEEMEEERGKKA-HATTTWS 65

  Fly    67 GEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYSKG--ACTQCDNVIRDGA-----PNKEFCSIM 124
                      :||   .:|..||..:.:....:.:.  .|.:|:   |.|:     |:...||..
Zfish    66 ----------VPT---AQEALSEGSVLKQDSPWGQRGLVCVRCN---RKGSAVDFLPDGLHCSER 114

  Fly   125 CMNKHQK--KNCSTRHSGGSASGK-----------------------GLAESERKLLASGAPAP- 163
            |:.:.|:  |...:|.:|...|.|                       ...|.|.:..|.||... 
Zfish   115 CLQQEQEELKTEGSRMNGELLSRKRTRLERSAEDMDSSMDIPEEEDEDYEEKESRRPARGATRGR 179

  Fly   164 ------------TGPFQYESFHVFDWDAYLEETGSEAAPAKCFKQAQNPP--NNDFKIGMKLEAL 214
                        |.|:..:. ..:.|.:|||:..:.|||:|.||:.|..|  .|.|::||:||.:
Zfish   180 KKRRGDAALLRYTVPYGGKK-KAWCWASYLEQERAIAAPSKLFKEYQCFPQCKNGFRVGMRLEGI 243

  Fly   215 DPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLGFRMN 279
            ||.:.:..|:.|:..|.|.|:||..|......|||...:|.:||.:|.|||.|..|.||.|.:..
Zfish   244 DPEHPSMYCVLTIAEVSGHRIRLHFDHFSDCYDFWVNSNSPDIHPVGWCEKTGHKLHPPKGMKDE 308

  Fly   280 ASSWPGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQI 344
            ..||..|:  .||....||:.:|..:......:.|:||.|||||.:|:|..||.|||..:.|.:.
Zfish   309 EFSWSSYI--KLNKIQTAPKALFHNQNMTVTPSGFRVGMKLEAVCRKDPTFICVATVTDMVDSRF 371

  Fly   345 HVTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPMQ-PPGHKSRMDSSSSKQRCPRPRYTVVAES 408
            .|.||.|..::||||:..|..|.|.|||..:...:. |||:....:.|..|         .:||:
Zfish   372 LVHFDNWEESYDYWCDATSPYIHPVGWCQENGRTLSTPPGYPDANNFSWEK---------YLAET 427

  Fly   409 EAMVPASPATA 419
            .:: || ||.|
Zfish   428 SSL-PA-PARA 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_001247006.1 zf-FCS 55..95 CDD:283998 11/39 (28%)
MBT 178..273 CDD:214723 39/96 (41%)
MBT <312..382 CDD:214723 30/70 (43%)
DUF3588 418..524 CDD:288954 1/2 (50%)
SAM_Scm 800..870 CDD:188977
SAM 806..867 CDD:197735
l3mbtl3NP_001232893.1 MBT 206..302 CDD:214723 39/95 (41%)
MBT 313..409 CDD:214723 36/97 (37%)
MBT 421..513 CDD:214723 8/27 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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