Protein Alignment Scm and Scml4

DIOPT Version :10

• Sequence 1: NP_731385.1
• Gene: Scm / 41168
• FlyBaseID: FBgn0003334
• Length: 877
• Species: Drosophila melanogaster
• Sequence 2: NP_001401945.1
• Gene: Scml4 / 309859
• RGDID: 1310898
• Length: 414
• Species: Rattus norvegicus
• Alignment Length: 547
• Identity: 120/547 - (21%)
• Similarity: 185/547 - (33%)
• Gaps: 208/547 - (38%)

  Fly   380 QPPGHKSRMD---------SSSS-------KQRCPRPRYTV------------------------ 404
            :||.|.:|:.         ||:|       |:|..:|||.:
  Rat    13 RPPLHSTRVQMAVHNLYSASSASVPAVTIPKKRGRKPRYKIKSPVLMTPLALSPPRSTPEPDLSS 77

  Fly   405 VAESEAMVP------ASPATAHFHPNCKGGPFINNSKLPCMV--TGPTYQTLAKLCLQEVLAAST 461
            :.:..|.||      |.....:.:.....||::...||..:.  .||......   ||:.:.|..
  Rat    78 IPQDAATVPSLVVPQAVTVCLYINKQADAGPYLERRKLQQLPERLGPERPAAV---LQQAVQACI 139

  Fly   462 DTQQLSKLLFAL-----EGDVHIVTAA--GKNFTVKIPSPMRMKDDESLAQFIETLCTTCRA--C 517
            |.....:|:|:|     .|::..|:|:  ||.....:|..      .|:...:..|...||:  |
  Rat   140 DCAHQPRLVFSLVKQGYRGELVSVSASFDGKQHLRNLPVV------NSVGYVLRFLTKLCRSLLC 198

  Fly   518 ANLISLVHETEECKKCANSRKRQLTQSATPPSSPVLADKRNRQSNSATTSPSEKIIKQELAVKSP 582
            .||.|                 .|....:..:|....:|.:.::.||..:.:|:.:...:.:
  Rat   199 DNLFS-----------------HLPFPGSIGASEKAQEKEDGRTESAKVATAEECLVNAVGM--- 243

  Fly   583 VESKSKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALRKVRFQ 647
                                                |:..|         ..|||.       |.
  Rat   244 ------------------------------------NRYTI---------DVSSTA-------FS 256

  Fly   648 HHANTNTNSSATNGNQDTSQTTHVSTSHCSSSSTSSSTSLAGGSANTSTIGKYLAPLVAEVHPEQ 712
            |..:                .|| |:|.......|..:.|.||.| |:|.|....|:
  Rat   257 HRGS----------------VTH-SSSLYYKRLNSGDSHLVGGPA-TTTSGSRTNPV-------- 295

  Fly   713 ANVKPSNSYYKSPTTLSSSASLPTSVSTPFTGCQSASSTALAAGGVTAAKAATAPAGAAATAGAS 777
                        |:..||:..|....|:|                   .:..||..|.......|
  Rat   296 ------------PSGGSSTPGLRLPASSP-------------------KRNGTAIEGNRCAPSPS 329

  Fly   778 PSYTAITSPVSTPTSALANSHLRSQPIDWTIEEVIQYIESND-NSLAVHGDLFRKHEIDGKALLL 841
            |.......|.|            ..|..||:|:|:::::..| .:|..|.:|||||||||.||||
  Rat   330 PEIQDTRRPSS------------RNPSTWTVEDVVRFVKDADPQALGPHVELFRKHEIDGNALLL 382

  Fly   842 LNSEMMMKYMGLKLGPALKICNLVNKV 868
            |.|:|:|||:|||||||||:|..::|:
  Rat   383 LRSDMIMKYLGLKLGPALKLCYHIDKL 409

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scm	NP_731385.1	zf-FCS	58..95	CDD:428958
		MBT_dScm_rpt1	196..294	CDD:439097
		MBT_dScm_rpt2	312..383	CDD:439100	1/2 (50%)
		SLED	418..522	CDD:463469	26/114 (23%)
		SAM_Scm	800..870	CDD:188977	38/70 (54%)
Scml4	NP_001401945.1	RBR	1..60	CDD:465382	12/46 (26%)
		SLED	95..203	CDD:463469	26/116 (22%)
		SAM_Scm	340..411	CDD:188977	39/82 (48%)