DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scm and L3mbtl3

DIOPT Version :9

Sequence 1:NP_001247006.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:XP_003748714.1 Gene:L3mbtl3 / 309550 RGDID:1305474 Length:868 Species:Rattus norvegicus


Alignment Length:968 Identity:239/968 - (24%)
Similarity:356/968 - (36%) Gaps:227/968 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SSTSSGSN-------------SAAPGAS--------------TNATSSASA-SASSTSTSASPGS 43
            |||:||..             ...||:.              |:.:...|. .|::|:|...|.:
  Rat     5 SSTTSGQEFDVFSVMDWKDGVGTLPGSDLKFRVNEFGALEVITDESEMESVKKATATTTWMVPTA 69

  Fly    44 TTSPAS--TQRQRGRPAKRATCTWC-----GEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYSK 101
            ..:|.|  :.|....||...:...|     .:..:|.:....::....:||...|      .|..
  Rat    70 QDAPPSPLSSRPAFPPAYWTSPPGCPTVFSEKTGVPFRLKEQSKVDGLQFCENCC------QYGN 128

  Fly   102 GA--------CTQ-CDNVI--------RDGAPNKEFCSIMCMNKHQKK---------------NC 134
            |.        |:| |....        |||..:.:.....|..|.:.|               ..
  Rat   129 GEECLSGGNYCSQNCSRRARDKDQKEDRDGGEDNDEEDPKCSRKKKPKLSLKADSKEDEERDDEM 193

  Fly   135 STRHSGGSASGKGLAESERK----LLASGAPAPTGPFQYESFHVFDWDAYLEETGSEAAPAKCFK 195
            ..:..|....|...|..:|:    :|..|.| |.|.      ..:.|.:||||..:.|.|.|.||
  Rat   194 ENKQDGRILRGSQRARRKRRGDSAVLKQGLP-PKGK------KTWCWASYLEEEKAVAVPTKLFK 251

  Fly   196 QAQNPP--NNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIH 258
            :.|:.|  .|.||:|||||.:||.:.:..|:.||..|.|.|::|..||.....|||...|:.:||
  Rat   252 EHQSFPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIH 316

  Fly   259 AIGHCEKNGGMLQPPLGFRMNASSWPGYL--CKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLE 321
            .:|.|||.|..|:||.|::....:|..||  ||    |..||:.:|:.:......:.|:||.|||
  Rat   317 PVGWCEKTGHKLRPPKGYKEEEFNWQSYLKTCK----AQAAPKSLFENQNITVIPSGFRVGMKLE 377

  Fly   322 AVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPM-QPPGHK 385
            |.|||:|.:||.|||..:.|::..|.||.|..::||||...|..|.|.|||......: .|||:.
  Rat   378 AADKKSPSIICVATVTDMVDNRFLVHFDNWDESYDYWCESNSPHIHPVGWCKEHRRTLITPPGYS 442

  Fly   386 SRMDSSSSKQRCPRPRYTVVAESEAMVPASPATAHFHPNCKGGPFINNSKLPCM-VTGPTYQTLA 449
            .....|..|          ..|....:|| ||.| |......| |....||..: ...|.:..:|
  Rat   443 HVKHFSWDK----------YLEETNSLPA-PARA-FKVKPPHG-FQKKMKLEAVDKRNPLFIRVA 494

  Fly   450 KLCLQEVLAASTDTQQLSKLLF------------ALEGDVHIVTAAGK-NFTVKIP-SPMRMKDD 500
            .:       |.||..:: |:.|            |...|:|.|....| ...::.| ||..:.:.
  Rat   495 TV-------ADTDDHRI-KVHFDGWSSCYDYWIDADSPDIHPVGWCSKTGHPLQAPLSPAELMEP 551

  Fly   501 ESLAQFIETLCTT--CRACANLISLVHETEECKKCANSRKRQL-TQS-ATPPSSPVLADKRNRQS 561
            .....     |.|  ||...:.               .:.|.| ||| |..|.|.:...|     
  Rat   552 SETGG-----CPTLGCRGVGHF---------------KKSRYLGTQSGANCPYSEINLSK----- 591

  Fly   562 NSATTSPSEKIIKQELAVKSPVES----KSKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKV- 621
                    ::|....|:.:....|    :||.:..|....:.:....|:.|...:|..|..|:| 
  Rat   592 --------DRIFPDRLSGEITPSSFSFPRSKRTDTNESSSSPETRDQHANNVKEDSEKKKENEVK 648

  Fly   622 ------VIKSEPNGANAQTSSTTQALRKVRFQHHANTNTNSSATNGNQDTSQTTHVSTSHCSSSS 680
                  |::.||..:..||....|||:.          ..:......|...|......:...:..
  Rat   649 TSAEAKVVREEPTPSVQQTQPPQQALKA----------PQAPQIQPAQQAPQAPQAQPTQQQAQQ 703

  Fly   681 TSSSTSLAGGSANTSTIGKYLAPLVAEVHPEQANVKPSNSYYKSPTTLSSSASLPTSVSTPFTGC 745
            ...:........         ||...:.||.|...:.:     .||...:..:.||..       
  Rat   704 AQQAPQAPQAQP---------APQAPQTHPTQQQAQQA-----QPTQQQAQQAQPTQQ------- 747

  Fly   746 QSASSTALAAGGVTAAKAATAPAGAAATAGAS---PSYTAITSPVSTPTSALANSHLRSQPIDWT 807
            |.|...|.....|..:.....|.........|   |:...|      |.|.::.         |:
  Rat   748 QQAQQQAQRRSAVFLSFKPPIPCLPLRWEQQSKLLPTVAGI------PASRVSK---------WS 797

  Fly   808 IEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLLLNSEMMMKYMGLKLGPALKICNLV 865
            .:||.::|:|.. ....||.:|:..:|||:|.||:....::|.|.:||||||||.|.:
  Rat   798 TDEVSEFIQSLP-GCEEHGKVFKDEQIDGEAFLLMTQTDIVKIMSIKLGPALKIFNSI 854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_001247006.1 zf-FCS 55..95 CDD:283998 7/44 (16%)
MBT 178..273 CDD:214723 42/96 (44%)
MBT <312..382 CDD:214723 31/70 (44%)
DUF3588 418..524 CDD:288954 25/122 (20%)
SAM_Scm 800..870 CDD:188977 25/66 (38%)
SAM 806..867 CDD:197735 25/60 (42%)
L3mbtl3XP_003748714.1 MBT 235..331 CDD:214723 42/95 (44%)
MBT 342..438 CDD:214723 39/99 (39%)
MBT 450..542 CDD:214723 24/112 (21%)
SAM_Scm-like-3MBT3,4 793..858 CDD:188981 25/72 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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