DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scm and Sfmbt2

DIOPT Version :9

Sequence 1:NP_001247006.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:NP_001100834.2 Gene:Sfmbt2 / 307106 RGDID:1305027 Length:890 Species:Rattus norvegicus


Alignment Length:954 Identity:207/954 - (21%)
Similarity:325/954 - (34%) Gaps:319/954 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 TWCGEGKLPLQYVLPTQTGKKEFCSETCIAEFRKAYSKGACTQCDNVIR--DGAPNK-----EFC 121
            |.||: .|.|:|....:..:.:|..:..||:.   :..|.|||.:.|:|  |....|     ||.
  Rat    97 TTCGQ-LLLLRYCGYGEDRRADFWCDVIIADL---HPVGWCTQNNKVLRPPDAIKEKYADWEEFL 157

  Fly   122 SIMCMNKHQKKNCSTRHSG---GSASGKG------------LAESERKLLASGAPAPTGPFQY-- 169
            .      |:.....|..:.   |...|||            |.:|:            .||||  
  Rat   158 I------HELTGSRTAPASLLEGPLRGKGPIDLITVDSLIELQDSQ------------NPFQYWI 204

  Fly   170 ---------------------ESFH----------------------------------VFDWDA 179
                                 ||:.                                  .|:|..
  Rat   205 VSVIENVGGRLRLRYVGLEHTESYDRWLFYLDYRLRPIGWCQEKKYRMDPPSELYYLKLPFEWKC 269

  Fly   180 YLEETGSEAA----PAKCFKQAQNPPNNDFKIGMKLEAL---DPRNVTSTCIATVVGVLGSR-LR 236
            .||:....||    |.:.||...:..::.|.:||:||.|   ||.::..   |||..|..|: .:
  Rat   270 ALEKALLAAAECPLPMEVFKDHADLGSHFFTVGMRLETLHINDPFHIYP---ATVTKVFNSQFFQ 331

  Fly   237 LRLDGSDSQNDFWRLV---DSTEIHAIGHCEKNGGMLQPPLGFRMNASSWPGYLCKILNNAMVAP 298
            :.:|...::.:...::   ||..|..:..|.|||..|.||.|:.....:|..|          ..
  Rat   332 VAIDDLRAETNGLTMLCHADSLGILPVQWCLKNGVNLAPPKGYSGQDFNWVDY----------HK 386

  Fly   299 EEIFQPEPPEPEENLFKVG----QKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAF-DYW 358
            :...:..||...:|.|..|    .|||||:.|||..:|.|||.:::...:.:..:|..... :..
  Rat   387 QREAEGAPPYCFKNTFARGFAKNMKLEAVNPKNPGEVCVATVISVRGSLLWLRLEGVETPMPEII 451

  Fly   359 CNYRSRDIFPAGWCARSCHPMQPPGHKSRMDSSSSKQRCPRPRYTVVAESEAMVPA--------- 414
            .:..|.||||.|||..:.:|:..| :||   ||.||::    ..||..|..::.|.         
  Rat   452 VDIDSMDIFPVGWCEANSYPLTTP-YKS---SSKSKKK----PITVPPEKPSLPPVPVENIPQEL 508

  Fly   415 --SPAT---------AHFHP------NCKGGPFINN---SKLPCMVTGPTYQTLAKLCLQEVLAA 459
              .|.|         .::.|      .|..|||:|.   |:||..| ||   ....|.|:|:|..
  Rat   509 CLPPQTDTAAGAANEKYYCPQLFVNHRCFSGPFLNKGRISELPQSV-GP---GKCVLVLKEILTM 569

  Fly   460 ST-----------DTQQLSKLLFALEGDVHIVTAAGKNF--TVKIPSPMRMKDDESLAQFIETLC 511
            .|           :.|.:....:..:.:|......||.:  .|||     ::..:.:..|.:.:|
  Rat   570 ITNAAYKPGRVLRELQLVEDPEWDFQEEVLKAKYRGKIYRAVVKI-----VRTADQVTSFCQQVC 629

  Fly   512 TTCRACANLISLVHETEEC-KKCANSRKRQLTQSATPPSSPVLADKRNRQSNSATTSPSEKIIKQ 575
            .....|.||.|.:..:|.| :.|:...|.:.|         ....||.|            |||.
  Rat   630 AKLECCPNLFSPLLISENCPENCSIRTKTKYT---------YYYGKRKR------------IIKP 673

  Fly   576 ELAVKSPVESKSKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQA 640
            .|.                             .:|..||.|.:.:                    
  Rat   674 PLG-----------------------------ESNTESAPKPTRR-------------------- 689

  Fly   641 LRKVRFQHHANTNTNSSATNGNQDTSQTTHVSTSHCSSSSTSSSTSLAGGSANTSTIGKYLAPLV 705
             ||.|...:......|||......::|.|.                                   
  Rat   690 -RKRRKSIYVQKKRKSSAVAMPATSAQETE----------------------------------- 718

  Fly   706 AEVHPEQANVKPSNSYYKSPTTLSSSASLPTSVSTPFTGCQSASSTALAAGGVTAAKAATAPAGA 770
             |..||..:.....:.|    .:.:..:....|..|||..|.|......:|.|     ...|...
  Rat   719 -EDDPEALDTASEETGY----VVQNYKTQHVPVEMPFTRSQRAMILRKHSGAV-----KHPPVER 773

  Fly   771 AATAGASPSYTAITSPVSTPTSALANSH-----------LRSQPIDWTIEEVIQYIESNDNSLAV 824
            |....:..|..:..:....|...:..|.           |.|.|::|::.:|:::|:..|  .|.
  Rat   774 ARRVRSVHSTASSNNRNKVPLVRIEKSEDPRQSEEEKLILESNPLEWSVTDVVRFIKLTD--CAP 836

  Fly   825 HGDLFRKHEIDGKALLLLNSEMMMKYMGLKLGPALKICNLVNKV 868
            ...:|::.:|||:|||||....:.:.|.||||||:|:|:.:.:|
  Rat   837 LARIFQEQDIDGQALLLLTLPTVQECMELKLGPAIKLCHQIERV 880

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_001247006.1 zf-FCS 55..95 CDD:283998 9/30 (30%)
MBT 178..273 CDD:214723 29/105 (28%)
MBT <312..382 CDD:214723 25/74 (34%)
DUF3588 418..524 CDD:288954 31/136 (23%)
SAM_Scm 800..870 CDD:188977 26/69 (38%)
SAM 806..867 CDD:197735 23/60 (38%)
Sfmbt2NP_001100834.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3766
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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