DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scm and Scml4

DIOPT Version :9

Sequence 1:NP_001247006.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:NP_001346193.1 Gene:Scml4 / 268297 MGIID:2446140 Length:490 Species:Mus musculus


Alignment Length:595 Identity:128/595 - (21%)
Similarity:192/595 - (32%) Gaps:240/595 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   351 WRGAFDYWCNYRSRDIFPAGWCARSCHPM------------------QPPGHKSRMD-------- 389
            |.|.    |:.....:.||  |....|.:                  :||.|.:|:.        
Mouse    54 WSGL----CDQAVGPLLPA--CGLPSHAVRLAPAEMQTQRVPGRKRGRPPLHSTRVQMAVHNLYS 112

  Fly   390 -SSSS-------KQRCPRPRYTV------------------------VAESEAMVP------ASP 416
             |::|       |:|..:|||.:                        :.:..|.:|      |..
Mouse   113 ASAASVPAVTIPKKRGRKPRYKIKSPVLMTPLALSPPRSTPEPDLSSIPQDAATIPSLVVPEALT 177

  Fly   417 ATAHFHPNCKGGPFINNSKLPCMV--TGPTYQTLAKLCLQEVLAASTDTQQLSKLLFAL-----E 474
            ...:.:.....||::...||..:.  .||......   ||:.:.|..|.....:|:|:|     .
Mouse   178 VCLYINKQADVGPYLERRKLQQLPERLGPERPATV---LQQAVQACIDCAHQPRLVFSLVKQGYR 239

  Fly   475 GDVHIVTAA--GKNFTVKIPSPMRMKDDESLAQFIETLCTTCRA--CANLISLVHETEECKKCAN 535
            |::..|:|:  ||.....:|..      .|:...:..|...||:  |.||.|.:           
Mouse   240 GELVSVSASFDGKQHLRSLPVV------NSVGYVLRFLTKLCRSLLCDNLFSHL----------- 287

  Fly   536 SRKRQLTQSATP-PSSPVLADKRNRQSNSATTSPSEKIIKQELAVKSPVESKSKTSTNNGKEPAS 599
                       | |.|...:||...:.:..|.|......::.||                     
Mouse   288 -----------PFPGSIGASDKAQEREDGRTESAKVATAEECLA--------------------- 320

  Fly   600 QQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALRKVRFQHHANTNTNSSATNGNQD 664
                               |.|       |.|...         :.|.|..:             
Mouse   321 -------------------NAV-------GMNRYA---------MDFSHRGS------------- 337

  Fly   665 TSQTTHVSTSHCSSSSTSSSTSLAGGSANTSTIGKYLAPLVAEVHPEQANVKPSNSYYKSPTTLS 729
               .||.|:.:  ...|...:.||||.| |:|.|....|:                    |:..|
Mouse   338 ---VTHSSSLY--KRLTCGDSHLAGGPA-TTTSGSRTNPV--------------------PSGGS 376

  Fly   730 SSASLPTSVSTPFTGCQSASSTALAAGGVTAAKAATAPAGAAATAGASPSYTAITSPVSTPTSAL 794
            ||..|....|:|                   .:..||..|.......||.......|.|      
Mouse   377 SSPGLRLPASSP-------------------KRNGTAIEGNRCAPSPSPEVQDTRRPSS------ 416

  Fly   795 ANSHLRSQPIDWTIEEVIQYIESND-NSLAVHGDLFRKHEIDGKALLLLNSEMMMKYMGLKLGPA 858
                  ..|..||:|:|:::::..| .:|..|.:|||||||||.|||||.|:|:|||:|||||||
Mouse   417 ------RNPSTWTVEDVVRFVKDADPEALGPHVELFRKHEIDGNALLLLRSDMIMKYLGLKLGPA 475

  Fly   859 LKICNLVNKV 868
            ||:|..::|:
Mouse   476 LKLCYHIDKL 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_001247006.1 zf-FCS 55..95 CDD:283998
MBT 178..273 CDD:214723
MBT <312..382 CDD:214723 7/48 (15%)
DUF3588 418..524 CDD:288954 27/116 (23%)
SAM_Scm 800..870 CDD:188977 38/70 (54%)
SAM 806..867 CDD:197735 36/61 (59%)
Scml4NP_001346193.1 RBR 83..142 CDD:319226 11/58 (19%)
SLED 177..285 CDD:314933 26/116 (22%)
SAM_Scm 416..487 CDD:188977 39/82 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 89 1.000 Domainoid score I7846
eggNOG 1 0.900 - - E1_KOG3766
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D123551at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12247
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.970

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