DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scm and SCMH1

DIOPT Version :10

Sequence 1:NP_731385.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:NP_001381240.1 Gene:SCMH1 / 22955 HGNCID:19003 Length:670 Species:Homo sapiens


Alignment Length:748 Identity:260/748 - (34%)
Similarity:335/748 - (44%) Gaps:174/748 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 FDWDAYLEETGSEAAPAKCFKQAQNPPNNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRL 239
            |.||.||:||.|..||..||||:..||:|:|||.|||||.||||.||||||||||:.|:||||||
Human    38 FTWDKYLKETCSVPAPVHCFKQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRL 102

  Fly   240 DGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLGFRMNASSWPGYLCKILNNAMVAPEEIFQP 304
            ||||::|||||||||.||..||:|||||||||||||||:||||||.:|.|.||.|.:||..||..
Human   103 DGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIRIFHK 167

  Fly   305 EPPEPEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPA 369
            |||.|..|.||:|.||||||:|||..||.||:..::..::.||||||||||||||.:.||||||.
Human   168 EPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRDIFPV 232

  Fly   370 GWCARSCHPMQPPGHKSRMDSSSSKQRCPRPRYTVVAESEAMVPASPATAHFHPNCKGGPFINNS 434
            |||:.:...:||||.|..:..:      |.|...|..|..::..::.......|..:|       
Human   233 GWCSLTGDNLQPPGTKVVIPKN------PYPASDVNTEKPSIHSSTKTVLEHQPGQRG------- 284

  Fly   435 KLPCMVTGPTYQTLAKLCLQEVLAASTDTQQLSKLLFALEGDVHIVTAAGKNF-TVKIPSPMRMK 498
            :.|....|.|.:||..                           |.::|..|.. .:|.|.....|
Human   285 RKPGKKRGRTPKTLIS---------------------------HPISAPSKTAEPLKFPKKRGPK 322

  Fly   499 DDESLAQFIETLCTTCRACANLISLVHETEECKKCANSRKRQLTQSATPPSSPVLADKRNRQSNS 563
                                               ..|:::..|....||:||          .:
Human   323 -----------------------------------PGSKRKPRTLLNPPPASP----------TT 342

  Fly   564 ATTSPSEKIIKQELAVKSPVESKSKT-----STNNGKEPASQQNSNHSLNNNNNSASKS------ 617
            :|..|....:.|:.|.......::.|     :.|....|...:.....|.::...|..|      
Human   343 STPEPDTSTVPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKVQQLPDHFGPARASVVLQQA 407

  Fly   618 ---------SNKVVIKSEPNGANAQ-----------------TSSTTQALRKVRFQHHANTNTNS 656
                     ..|.|......|...:                 .:|.|..||.:....|   |..|
Human   408 VQACIDCAYHQKTVFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCH---NLRS 469

  Fly   657 SATNGNQDTSQT----THVSTSHCSSSSTSSSTSLAGGSANTSTIGKYLAPLVAEVHPEQANVKP 717
            ....|||..:||    |.:..||.........|.:.|.|     :.:.|.|     |.:..:   
Human   470 DNLFGNQPFTQTHLSLTAIEYSHSHDRYLPGETFVLGNS-----LARSLEP-----HSDSMD--- 521

  Fly   718 SNSYYKSPTTLSSSASLPTS-VSTP------FTGCQSASSTA-----LAAGGVTAAKAATAPAGA 770
                         |||.||: |||.      .:.|....|||     |.:.||...........:
Human   522 -------------SASNPTNLVSTSQRHRPLLSSCGLPPSTASAVRRLCSRGVLKGSNERRDMES 573

  Fly   771 AATAGASPSYTAITSPVSTPTSALANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEID 835
            ......||.......  |...|.|:.    ..|..||:|:|:|::...|..|..|.|||||||||
Human   574 FWKLNRSPGSDRYLE--SRDASRLSG----RDPSSWTVEDVMQFVREADPQLGPHADLFRKHEID 632

  Fly   836 GKALLLLNSEMMMKYMGLKLGPALKICNLVNKV 868
            |||||||.|:|||||||||||||||:...::::
Human   633 GKALLLLRSDMMMKYMGLKLGPALKLSYHIDRL 665

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_731385.1 zf-FCS 58..95 CDD:428958
MBT_dScm_rpt1 196..294 CDD:439097 75/97 (77%)
MBT_dScm_rpt2 312..383 CDD:439100 42/70 (60%)
SLED 418..522 CDD:463469 13/104 (13%)
SAM_Scm 800..870 CDD:188977 41/69 (59%)
SCMH1NP_001381240.1 MBT_SCMH1_rpt1 37..167 CDD:439095 93/128 (73%)
MBT_SCMH1_rpt2 172..246 CDD:439098 43/73 (59%)
PHA03247 <243..367 CDD:223021 32/208 (15%)
RBR 281..334 CDD:465382 14/121 (12%)
SLED 368..476 CDD:463469 17/110 (15%)
SAM_Scm 597..667 CDD:188977 41/73 (56%)
Blue background indicates that the domain is not in the aligned region.

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