DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scm and L3mbtl2

DIOPT Version :10

Sequence 1:NP_731385.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:NP_001276640.1 Gene:L3mbtl2 / 214669 MGIID:2443584 Length:739 Species:Mus musculus


Alignment Length:724 Identity:147/724 - (20%)
Similarity:216/724 - (29%) Gaps:326/724 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GGRDS----STSSGSNSAAPGASTNATSSASASASSTSTSASPGSTTSPASTQRQRGRPAKRATC 63
            ||.||    ::|:||.|::....::...:....|....|  ||....|.|:.:...|..::.|.|
Mouse    28 GGYDSFRSYNSSAGSESSSYLEESSEAENEDREAGELPT--SPLHLFSSANNRSLDGSGSEPAVC 90

  Fly    64 TWCGEGKLPLQYVLPTQ----TGKKEFCSETCIAEFRKAYSKGACTQCDNVIRDGAPNKEFCSIM 124
            ..||        ::.|:    :..|.|||.:|    .::||.               |.:..||:
Mouse    91 EMCG--------IVGTREAFFSKTKRFCSVSC----SRSYSS---------------NSKKASIL 128

  Fly   125 C--MNKHQKKNCSTRHSGG---------SASGKGLAESERKLLASGAPAPTGPFQYESFHVFDWD 178
            .  ..|...|.....|...         .|.|.|       .||.|  .|||  |......|||.
Mouse   129 ARLQGKPPTKKAKVLHKAAWSAKIGAFLHAQGTG-------QLADG--TPTG--QDALVLGFDWG 182

  Fly   179 AYLEETGSEAAPAKCFKQA---------------------------------------------- 197
            .:|::...:|||..|||..                                              
Mouse   183 KFLKDHSYKAAPVSCFKHVPLYDQWEDVMKGMKVEVLNSDAVLPSRVYWIATVIQAAGYRVLLRY 247

  Fly   198 ---QNPPNNDF-------------------KI--------------------------------- 207
               :|..::||                   ||                                 
Mouse   248 EGFENDASHDFWCNLGTVDVHPIGWCAINSKILVPPRTIHAKFTDWKSYLMKRLVGSRTLPADFH 312

  Fly   208 -------------GMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHA 259
                         ||:||.:|...|:.|.:|.|..|:|.||||..:..||.:|||..:.|..||.
Mouse   313 IKMVESMKYPFRQGMRLEVVDKTQVSRTRMAVVDTVIGGRLRLLYEDGDSDDDFWCHMWSPLIHP 377

  Fly   260 IG--------------------------------------------------------------- 261
            :|                                                               
Mouse   378 VGWSRRVGHGIKMSDRRCDMSHHPTFRKIYCDAVPYLFKKVRAVYTEGGWFEEGMKLEAIDPLNL 442

  Fly   262 ----------------------------------------------HCEKNGGMLQPPLGFRMNA 280
                                                          .|:||...|.||.|:....
Mouse   443 GSICVATICKVLLDGYLMICVDGGPSTDGSDWFCYHASSHAIFPATFCQKNDIELTPPKGYETQP 507

  Fly   281 SSWPGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIH 345
            .:|..||.|..:.|  ||..:|..:.|   .:.||||.||||||...|:|||.|||..:....:.
Mouse   508 FAWETYLEKTKSKA--APARLFNMDCP---NHGFKVGMKLEAVDLMEPRLICVATVKRVVHRLLS 567

  Fly   346 VTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPMQPP-------GHKSRMDSSSSKQRCPRPRYT 403
            :.||||...:|.|.:..|.||:|.|||..:.:.:|||       ..|.:..:...|::..:.|..
Mouse   568 IHFDGWDNEYDQWVDCESPDIYPVGWCELTGYQLQPPVSAEPNTPQKGKDTTKKKKKQFGKKRKR 632

  Fly   404 VVAESEAMVPASPATAHFHPNCKGGPFINNSKLPCM--------VTGPTYQTLAKLCLQEVLAAS 460
            :                  |:.|..|....||.|.:        |:.|....:..:|::|     
Mouse   633 I------------------PSAKTRPLRQGSKKPLLEDNLEALGVSEPVPDDIIAVCVKE----- 674

  Fly   461 TDTQQLSKL 469
             :.|.:|.|
Mouse   675 -EHQDISSL 682

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_731385.1 zf-FCS 58..95 CDD:428958 10/40 (25%)
MBT_dScm_rpt1 196..294 CDD:439097 40/320 (13%)
MBT_dScm_rpt2 312..383 CDD:439100 33/77 (43%)
SLED 418..522 CDD:463469 13/60 (22%)
SAM_Scm 800..870 CDD:188977
L3mbtl2NP_001276640.1 MBT_L3MBTL2_rpt1 207..308 CDD:439111 5/100 (5%)
MBT_L3MBTL2_rpt2 310..393 CDD:439114 24/82 (29%)
MBT 428..518 CDD:459242 11/89 (12%)
MBT_dSfmbt-like_rpt4 534..604 CDD:439090 31/69 (45%)
Blue background indicates that the domain is not in the aligned region.

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