DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scm and Scml2

DIOPT Version :9

Sequence 1:NP_001247006.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:XP_006528733.1 Gene:Scml2 / 107815 MGIID:1340042 Length:1136 Species:Mus musculus


Alignment Length:1182 Identity:311/1182 - (26%)
Similarity:457/1182 - (38%) Gaps:395/1182 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 ASSTSTSASPGSTTSPASTQRQRGRPAKRATCTWCGEGKLPLQYVLPTQTGKKEFCSETCIA--- 93
            |.|....|.||    |:||:.:  .||.....  .|.|:|..:.. |..||.:|..:...:|   
Mouse    11 AGSGELVAEPG----PSSTEAR--EPATGVQL--AGSGQLVAEQG-PPSTGGREPATGVQLAGSG 66

  Fly    94 -----------EFRK-AYSKGACTQCDNVIRDGAPNKEFCSIMCMNKHQKKNCSTRHSGGS---A 143
                       |.|: |.::|.......|.:.|.|                      |.|.   |
Mouse    67 ELVAEPGPSSTEAREPATAEGTSGLGQQVTKQGHP----------------------STGEMEPA 109

  Fly   144 SGKGLAESERKLLASGAPAPT------------GPFQYESFHVFDWDAYLEETGSEAAPAKCFKQ 196
            :|..||.| .:|:|...|:.|            |....|..  ||||.||:||||.:||::.|:|
Mouse   110 TGVQLAGS-GELVAEPGPSSTEARENTEEANTMGQTANEDH--FDWDKYLKETGSISAPSEYFRQ 171

  Fly   197 AQNPPNNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQNDFWRLVDSTEIHAIG 261
            ::.||.|:|||||||||.||||:.|.|:|:|:|:.|:||||||||||::|||||||||::|..:|
Mouse   172 SKTPPTNEFKIGMKLEARDPRNIDSVCVASVIGITGARLRLRLDGSDNKNDFWRLVDSSDIQPVG 236

  Fly   262 HCEKNGGMLQPPLGFRMNASSWPGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLEAVDKK 326
            .||:.|.:||||||:.:|.||||.:|.::|..:.:||...|:.|||.|.:|.|.||.|:||||:|
Mouse   237 TCEQGGDLLQPPLGYTLNTSSWPMFLLRVLTGSELAPAVFFKEEPPRPLQNNFIVGMKIEAVDRK 301

  Fly   327 NPQLICCATVDAIKDDQIHVTFDGWRGAFDYWCNYRSRDIFPAGWCARSCHPMQPPG-------- 383
            ||.:||.||:.|:..||:|:|||||.|||||||:|.||||||.|||..:...:||||        
Mouse   302 NPFMICPATIGAVCGDQLHITFDGWSGAFDYWCDYDSRDIFPVGWCRLTGDVLQPPGKIVEKRPR 366

  Fly   384 --HKSRM---------DSSSSKQRCPRPRYTVVA---------ESEAMVPASPATAHFH------ 422
              .::|:         :...:.:....|..:|:.         :........|.|:.|.      
Mouse   367 RKRRTRLWRLRTALLGNEEEAPEAAEEPGTSVLTFGDENRTLKDCRGEAAEEPGTSAFTFGDENR 431

  Fly   423 --PNCKGG-------PFINNSK-----------LPC-------MVTGPTYQTLAKLCLQEVLAAS 460
              .:|:||       .||...|           .|.       ..|.|.......  .::|..|.
Mouse   432 TLKDCQGGWKKPKGRGFIKPGKDETRPGKHDQGAPAGKKPRGRGFTQPLEDEARP--GRDVQVAP 494

  Fly   461 TDTQQLSKL----------LFALEGDV--------HIVTA---------------------AGKN 486
            .:.::..|.          |||.:||.        ..||.                     .||.
Mouse   495 AEKKRKGKTVTTPWTEDPRLFADQGDAPAEKKRKGKTVTTPWTEDPRLFADQGDAPAEKKRKGKT 559

  Fly   487 FTVKIPSPMRMKDDESLA-----QFIETLCTTCRACANLISLVHETEECKKCAN-----SRKRQL 541
            .|.......|:..|:..|     :..:|:.|..            ||:.:..|:     :.|::.
Mouse   560 VTTPWTEDPRLFADQGAAPAEKKRKGKTVTTPW------------TEDPRLFADQGDAPAEKKRK 612

  Fly   542 TQSATPP--SSP-VLAD------KRNRQSNSATT--------------SPSEKIIKQELAV---- 579
            .::.|.|  ..| :.||      ::.|:..:.||              :|:||..|.:...    
Mouse   613 GKTVTTPWTEDPRLFADQGDAPAEKKRKGKTVTTPWTEDPRLFADQGAAPAEKKRKGKTVTTPWT 677

  Fly   580 ----------KSPVESKSKTST-------------NNGKEPASQQN------------------- 602
                      .:|.|.|.|..|             :.|..||.::.                   
Mouse   678 EDPRLFADQGDAPAEKKRKGKTVTTPWTEDPRLFADQGDAPAEKKPKGKRVTKSRKDQAQFLADE 742

  Fly   603 -------SNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALRK-------VRFQHHANTN 653
                   |..|:::...:...||.:.  ||..:|....||...|..||       |:.....:..
Mouse   743 EAMPALFSALSVSSTERTPPSSSEQP--KSSTSGKTKSTSRGAQTSRKSPRKTSVVQPVPKTSKK 805

  Fly   654 TNSSATNGNQDT-----------------------------SQTTHVSTSHCSSSSTSSSTSLAG 689
            ...|.:.||..:                             |.|:..|.|....||:|:.||...
Mouse   806 AGKSKSTGNTSSPKKGITIKIVLPKKKGGKSGKKEKSIPVISSTSSASLSTLMKSSSSNKTSAGP 870

  Fly   690 GSANTSTI----------GKYLAPLVAEVHPEQANVKPSN------------------------- 719
            .....||:          |.:|.|...:..|......|.|                         
Mouse   871 SKIVMSTVCVYINKHGDCGPFLDPQKVQQLPNHFGPGPVNVILQRTVQACVNCAFQAKDVFLFLK 935

  Fly   720 ----------SYY-------KSPTTLSSSASL-----------------------PTSVSTPFTG 744
                      :::       :.|...|:|.:|                       ...|.||.||
Mouse   936 TDNRGGEMITAFFDGKVHTVQLPPVNSASFALRFLENFCQSLQCDNFLSSQPFRREAQVPTPDTG 1000

  Fly   745 C-----------QSASSTALAAGGVTAAKAATAPAGAAATAGASPSYTAITSPVSTPTSALANSH 798
            .           :..|...|:.....:|..::.....:..|..:.||..:..|     |.|....
Mouse  1001 TDQSKPENGEPKEKRSLKRLSLHPHRSAPVSSKVPRKSGQASKASSYITVPDP-----SVLKQGF 1060

  Fly   799 LRSQPIDWTIEEVIQYIESNDNSLA-VHGDLFRKHEIDGKALLLLNSEMMMKYMGLKLGPALKIC 862
            .: .|..|:::||||:::..|..:: ...||||:|||||||||||.||::|||||||||||:|:|
Mouse  1061 CK-DPSTWSVDEVIQFMKHTDPQISGPLADLFRQHEIDGKALLLLKSELLMKYMGLKLGPAVKLC 1124

  Fly   863 NLVNKVNGRRNN 874
            ..:.|:....:|
Mouse  1125 YYIEKLKEINHN 1136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_001247006.1 zf-FCS 55..95 CDD:283998 10/53 (19%)
MBT 178..273 CDD:214723 59/94 (63%)
MBT <312..382 CDD:214723 43/69 (62%)
DUF3588 418..524 CDD:288954 29/182 (16%)
SAM_Scm 800..870 CDD:188977 38/70 (54%)
SAM 806..867 CDD:197735 36/61 (59%)
Scml2XP_006528733.1 MBT 153..248 CDD:214723 59/94 (63%)
MBT 266..357 CDD:214723 51/90 (57%)
PTZ00121 <403..>742 CDD:173412 54/352 (15%)
SLED 877..986 CDD:371916 11/108 (10%)
SAM_Scm 1062..1132 CDD:188977 38/70 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6826
eggNOG 1 0.900 - - E1_KOG3766
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D123551at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm42975
orthoMCL 1 0.900 - - OOG6_105988
Panther 1 1.100 - - LDO PTHR12247
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2741
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.870

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