DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scm and scmh1

DIOPT Version :10

Sequence 1:NP_731385.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:NP_001082953.1 Gene:scmh1 / 100037329 ZFINID:ZDB-GENE-070410-82 Length:120 Species:Danio rerio


Alignment Length:101 Identity:77/101 - (76%)
Similarity:87/101 - (86%) Gaps:0/101 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 FDWDAYLEETGSEAAPAKCFKQAQNPPNNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRL 239
            |.|:.||:|||:.||||:.|||:..||.|:||.||||||.||||.||||||||||:.||||||||
Zfish    11 FSWEKYLKETGAVAAPAQYFKQSTEPPENEFKAGMKLEAQDPRNTTSTCIATVVGLTGSRLRLRL 75

  Fly   240 DGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLG 275
            ||||::|||||||||.||..||:|||||||||||||
Zfish    76 DGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLG 111

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_731385.1 zf-FCS 58..95 CDD:428958
MBT_dScm_rpt1 196..294 CDD:439097 64/80 (80%)
MBT_dScm_rpt2 312..383 CDD:439100
SLED 418..522 CDD:463469
SAM_Scm 800..870 CDD:188977
scmh1NP_001082953.1 MBT 10..>111 CDD:459242 75/99 (76%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.