DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scm and sfmbt1

DIOPT Version :10

Sequence 1:NP_731385.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:XP_021335466.2 Gene:sfmbt1 / 100001629 ZFINID:ZDB-GENE-030131-2592 Length:868 Species:Danio rerio


Alignment Length:814 Identity:186/814 - (22%)
Similarity:271/814 - (33%) Gaps:255/814 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 QKKNCSTRHSGGSASGKGLAESERKLLASGAPAPTGPFQYESFHVFDWDAYLEETGSE------- 187
            |:.||:.|                      .||...|.:.|.    :|:...:...|:       
Zfish   225 QEHNCTLR----------------------PPAALLPLRTEP----EWEEVKKSISSQEQDSSIS 263

  Fly   188 --------AAPAKCFKQAQNPPNNDFKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDS 244
                    |....||.:           ||||||:||....:...|||..|...:..|.|  .|.
Zfish   264 EEFYRDRSAITPHCFTE-----------GMKLEAVDPAAPFTISPATVAKVFNEQFFLVL--MDD 315

  Fly   245 QND----------FWRLVDSTEIHAIGHCEKNGGMLQPPLGFRMNASSWPGYL--CKILNNAMVA 297
            ..|          |....||..|.......|||..|.||.||:.....|..||  |:    |..|
Zfish   316 MRDEAQKEGGAHSFLCHRDSPGIFPTQWSLKNGVKLSPPPGFQGQDFDWADYLKQCE----AEAA 376

  Fly   298 PEEIFQPEPPEPEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAF-DYWCNY 361
            |::.|   ||:|.:...|....||||:...|:.|..|||..:|...:.:..:|.:.|. :...:.
Zfish   377 PQQCF---PPDPSDQCIKESMMLEAVNPICPENIHVATVTKVKGQHMWIRLEGLKQAMPEIIVHT 438

  Fly   362 RSRDIFPAGWCARSCHPMQPPGHKSRMDSSSSKQRCPRPRYTVVAESEAMVP---ASPATAHFHP 423
            .|.||||..||..:.:|:..| .|.|::    |||    :..||...:..||   :||.|...|.
Zfish   439 DSMDIFPVSWCETNGYPLLHP-CKPRVE----KQR----KVAVVQPEKHRVPSKDSSPDTTKQHM 494

  Fly   424 N------------------------CKGGPFINN---SKLPCMVTGPTYQTLAKLCLQEVL---- 457
            |                        |..||::|.   ::||..| ||..   ..|.|:|||    
Zfish   495 NSSQAEMAGQANGKYCCPKIYFNHRCFSGPYLNKGRIAELPQCV-GPGN---CVLVLKEVLTLLI 555

  Fly   458 -AASTDTQQLSKLLFALEG--DVHIVTA----AGKNF--TVKIPSPMRMKDDESLAQFIETLCTT 513
             :|...::.|.:|....||  ..|..|.    .||::  ||:|     ::..:.:|.|....|..
Zfish   556 NSAYKPSRVLRELQLDQEGRWQGHGETLKAKYKGKSYRATVEI-----VRTADQVADFCRKTCIK 615

  Fly   514 CRACANLIS----LVHETEECKKCANSRKRQLTQSATPPSSPVLADKRNRQSNSATTSPSEKIIK 574
            ...|.||..    |.|.:|.|.        .||::                              
Zfish   616 LECCPNLFGPRMVLEHCSENCS--------VLTKT------------------------------ 642

  Fly   575 QELAVKSPVESKSKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQ 639
                 |.......|.|...|:.|....|....:........:.....|.|...:.|:..      
Zfish   643 -----KYTYYYGKKKSRRVGRPPGGHSNLEGGVKRRGRRRKRRKQLFVHKKRRSSASVD------ 696

  Fly   640 ALRKVRFQHHANTNTNSSATNGNQDTSQTTHVSTSHCSSSSTSSSTSLAGGSANTSTIGKYLAPL 704
                         ||.:.:..|:.|.....       ...|.|..|.                  
Zfish   697 -------------NTPAGSPQGSGDEEDLD-------EDDSLSEDTG------------------ 723

  Fly   705 VAEVHPEQANVKPSNSYYKSPTTLSSSASLPTSVSTPFTGCQSASSTALAAGGVTAAKAATAPAG 769
             :|:..|..:....:.....|.|.|     |:...||                     ..|....
Zfish   724 -SEMQDELMDDSEYSEKKSQPPTPS-----PSPPETP---------------------RPTRRRR 761

  Fly   770 AAATAGASPSYTAITSPVSTPTSALANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEI 834
            .|.:...|.......||.|..|.......|.|.|::|::.:|:::|.:.|  .|....:|...||
Zfish   762 KARSPSCSDDENRPPSPKSPRTEVPQKLCLDSSPLEWSVTDVVRFIRTTD--CAPLARIFMDQEI 824

  Fly   835 DGKALLLLNSEMMMKYMGLKLGPALKICNLVNKV 868
            ||:||||||...:.:.|.||||||:|:|:.:.:|
Zfish   825 DGQALLLLNLPTVQECMDLKLGPAIKLCHHIERV 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_731385.1 zf-FCS 58..95 CDD:428958
MBT_dScm_rpt1 196..294 CDD:439097 32/109 (29%)
MBT_dScm_rpt2 312..383 CDD:439100 21/71 (30%)
SLED 418..522 CDD:463469 35/143 (24%)
SAM_Scm 800..870 CDD:188977 28/69 (41%)
sfmbt1XP_021335466.2 None
Blue background indicates that the domain is not in the aligned region.

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