DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scm and sfmbt1

DIOPT Version :9

Sequence 1:NP_001247006.1 Gene:Scm / 41168 FlyBaseID:FBgn0003334 Length:877 Species:Drosophila melanogaster
Sequence 2:XP_005155896.2 Gene:sfmbt1 / 100001629 ZFINID:ZDB-GENE-030131-2592 Length:868 Species:Danio rerio


Alignment Length:809 Identity:185/809 - (22%)
Similarity:275/809 - (33%) Gaps:245/809 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 QKKNCSTRHSGGSASGKGLAESERKLLASGAPAPTGPFQYESFHVFDWDAYLEETGSEAAPAKCF 194
            |:.||:.|                      .||...|.:.|:    :|:...:...|        
Zfish   225 QEHNCTLR----------------------PPAALLPLRTEA----EWEEVKKSISS-------- 255

  Fly   195 KQAQNPPNND-------------FKIGMKLEALDPRNVTSTCIATVVGVLGSRLRLRLDGSDSQN 246
             |.|:|..::             |..||||||:||....:...|||..|...:..|.|  .|...
Zfish   256 -QEQDPSISEEFYRDRSAITPHCFTEGMKLEAVDPAAPFTISPATVAKVFNEQFFLVL--MDDMR 317

  Fly   247 D----------FWRLVDSTEIHAIGHCEKNGGMLQPPLGFRMNASSWPGYL--CKILNNAMVAPE 299
            |          |....||..|.......|||..|.||.||:.....|..||  |:    |..||:
Zfish   318 DEAQKEGGAHSFLCHRDSPGIFPTQWSLKNGVKLSPPPGFQGQDFDWADYLKQCE----AEAAPQ 378

  Fly   300 EIFQPEPPEPEENLFKVGQKLEAVDKKNPQLICCATVDAIKDDQIHVTFDGWRGAF-DYWCNYRS 363
            :.|   ||:|.:...|....||||:...|:.|..|||..:|...:.:..:|.:.|. :...:..|
Zfish   379 QCF---PPDPSDQCIKESMMLEAVNPICPENIHVATVTKVKGQHMWIRLEGLKQAMPEIIVHTDS 440

  Fly   364 RDIFPAGWCARSCHPMQPPGHKSRMDSSSSKQRCPRPRYTVVAESEAMVP---ASPATAHFHPN- 424
            .||||..||..:.:|:..| .|.|::    |||    :..||...:..||   :||.|...|.| 
Zfish   441 MDIFPVSWCETNGYPLLHP-CKPRVE----KQR----KVAVVQPEKHRVPSKDSSPDTTKQHMNS 496

  Fly   425 -----------------------CKGGPFINN---SKLPCMVTGPTYQTLAKLCLQEVL-----A 458
                                   |..||::|.   ::||..| ||..   ..|.|:|||     :
Zfish   497 SQAEMAGQANGKYCCPKIYFNHRCFSGPYLNKGRIAELPQCV-GPGN---CVLVLKEVLTLLINS 557

  Fly   459 ASTDTQQLSKLLFALEG--DVHIVTA----AGKNF--TVKIPSPMRMKDDESLAQFIETLCTTCR 515
            |...::.|.:|....||  ..|..|.    .||::  ||:|     ::..:.:|.|....|....
Zfish   558 AYKPSRVLRELQLDQEGRWQGHGETLKAKYKGKSYRATVEI-----VRTADQVADFCRKTCIKLE 617

  Fly   516 ACANLISLVHETEEC-KKCANSRKRQLTQSATPPSSPVLADKRNRQSNSATTSPSEKIIKQELAV 579
            .|.||.......|.| :.|:...|.:.|.        ....|::|:.                  
Zfish   618 CCPNLFGPRMVLERCSENCSVLTKTKYTY--------YYGKKKSRRV------------------ 656

  Fly   580 KSPVESKSKTSTNNGKEPASQQNSNHSLNNNNNSASKSSNKVVIKSEPNGANAQTSSTTQALRKV 644
                          |:.|....|....:........:.....|.|...:.|:..           
Zfish   657 --------------GRPPGGHSNLEGGVKRRGRRRKRRKQLFVHKKRRSSASVD----------- 696

  Fly   645 RFQHHANTNTNSSATNGNQDTSQTTHVSTSHCSSSSTSSSTSLAGGSANTSTIGKYLAPLVAEVH 709
                    ||.:.:..|:.|.....       ...|.|..|.                   :|:.
Zfish   697 --------NTPAGSPQGSGDEEDLD-------EDDSLSEDTG-------------------SEMQ 727

  Fly   710 PEQANVKPSNSYYKSPTTLSSSASLPTSVSTPFTGCQSASSTALAAGGVTAAKAATAPAGAAATA 774
            .|..:....:.....|.|.|     |:...||                     ..|.....|.:.
Zfish   728 DELMDDSEYSEKKSQPPTPS-----PSPPETP---------------------RPTRRRRKARSP 766

  Fly   775 GASPSYTAITSPVSTPTSALANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKAL 839
            ..|.......||.|..|.......|.|.|::|::.:|:::|.:.|  .|....:|...||||:||
Zfish   767 SCSDDENRPPSPKSPRTEVPQKLCLESSPLEWSVTDVVRFIRTTD--CAPLARIFMDQEIDGQAL 829

  Fly   840 LLLNSEMMMKYMGLKLGPALKICNLVNKV 868
            ||||...:.:.|.||||||:|:|:.:.:|
Zfish   830 LLLNLPTVQECMDLKLGPAIKLCHHIERV 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScmNP_001247006.1 zf-FCS 55..95 CDD:283998
MBT 178..273 CDD:214723 29/117 (25%)
MBT <312..382 CDD:214723 21/70 (30%)
DUF3588 418..524 CDD:288954 35/145 (24%)
SAM_Scm 800..870 CDD:188977 28/69 (41%)
SAM 806..867 CDD:197735 25/60 (42%)
sfmbt1XP_005155896.2 MBT 22..120 CDD:214723
MBT 153..234 CDD:327428 4/30 (13%)
MBT 255..354 CDD:214723 29/109 (27%)
MBT 366..456 CDD:214723 30/96 (31%)
SLED 511..626 CDD:314933 32/123 (26%)
SAM_Scm-like-4MBT1,2 784..868 CDD:188980 29/77 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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