DRSC/TRiP Functional Genomics Resources

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Protein Alignment SpdS and Sms

DIOPT Version :10

Sequence 1:NP_731384.1 Gene:SpdS / 41167 FlyBaseID:FBgn0037723 Length:287 Species:Drosophila melanogaster
Sequence 2:NP_001029071.1 Gene:Sms / 363469 RGDID:1564826 Length:366 Species:Rattus norvegicus


Alignment Length:242 Identity:73/242 - (30%)
Similarity:109/242 - (45%) Gaps:42/242 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 WP---GQSFSLKVKEVIHKEKSRFQDIQIVETETYGRCLILDGIIQCTARDEFSYQEMISFLPLC 78
            ||   |:.....:.||::.|.|.:|:|:|:.::.:|..|||.|.:. .|..:.:|...|.     
  Rat   124 WPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVN-LAESDLAYTRAIM----- 182

  Fly    79 AHPNPKK------VLIVGGGDGGVAREVVK-HPLVEEVHQVEIDDRVVELSKQYLPAMACGFANE 136
              .|.|:      |||:||||||:..|:|| .|  :.|..||||..|::..|:|: ...||...:
  Rat   183 --GNGKEDYTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYM-RRTCGDVLD 242

  Fly   137 KLK-----LTIGDGFDYMK---KHKNEFDVIITD------SSDPIGPAVSLFQESYYELMKHALK 187
            .||     :.|.|....:|   |...|||.:|.|      |:.|...:...|.....:|....||
  Rat   243 NLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLK 307

  Fly   188 DDGIVCSQGGSFWLD--LDYIKKTMSG--CKEHFAKVAYAVTSVPSY 230
            .||...:||....|.  |...::.:..  |...|:|   .:..||||
  Rat   308 QDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSK---EIVCVPSY 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SpdSNP_731384.1 AdoMet_MTases 1..283 CDD:473071 73/242 (30%)
SmsNP_001029071.1 SpmSyn_N 21..117 CDD:465581
Spermine_synt_N 123..172 CDD:407397 15/48 (31%)
Spermine_synth 175..365 CDD:396237 57/190 (30%)
Blue background indicates that the domain is not in the aligned region.

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