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Protein Alignment SpdS and Srm

DIOPT Version :9

Sequence 1:	NP_001247005.1	Gene:	SpdS / 41167	FlyBaseID:	FBgn0037723	Length:	287	Species:	Drosophila melanogaster
Sequence 2:	NP_033298.1	Gene:	Srm / 20810	MGIID:	102690	Length:	302	Species:	Mus musculus

Alignment Length:	283	Identity:	160/283 - (56%)
Similarity:	218/283 - (77%)	Gaps:	3/283 - (1%)

- Green bases have known domain annotations that are detailed below.

  Fly     3 SLNNGWFSELQADLWPGQSFSLKVKEVIHKEKSRFQDIQIVETETYGRCLILDGIIQCTARDEFS 67
            ::..|||.| ...|||||:.||:|::::|..:||:|||.:..::|||..|:|||:||||.|||||
Mouse    15 AIREGWFRE-TCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFS 78

  Fly    68 YQEMISFLPLCAHPNPKKVLIVGGGDGGVAREVVKHPLVEEVHQVEIDDRVVELSKQYLPAMACG 132
            |||||:.||||:||||:||||:|||||||.|||||||.||.|.|.|||:.|:|:||::||.||.|
Mouse    79 YQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIEVSKKFLPGMAVG 143

  Fly   133 FANEKLKLTIGDGFDYMKKHKNEFDVIITDSSDPIGPAVSLFQESYYELMKHALKDDGIVCSQGG 197
            |::.||.|.:||||::||::::.|||||||||||:|||.|||:||||:|||.|||:|||:|.||.
Mouse   144 FSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGILCCQGE 208

  Fly   198 SFWLDLDYIKKTMSGCKEHFAKVAYAVTSVPSYPCGHIGFVMGSLNKNQDFATP--KLGKSEIDS 260
            ..||.||.||:....||..|..|.||..|:|:||.|.|||::.|.|.:.:|..|  :|.:::::.
Mouse   209 CQWLHLDLIKEMRHFCKSLFPVVDYAYCSIPTYPSGQIGFMLCSKNPSTNFREPVQQLTQAQVEQ 273

  Fly   261 IDLRYYSSEVHSAAFALPRWVQK 283
            :.|:||:|::|.|||.||.:.:|
Mouse   274 MQLKYYNSDMHRAAFVLPEFTRK 296

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.