back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment SpdS and Sms

DIOPT Version :9

Sequence 1:	NP_001247005.1	Gene:	SpdS / 41167	FlyBaseID:	FBgn0037723	Length:	287	Species:	Drosophila melanogaster
Sequence 2:	NP_033240.3	Gene:	Sms / 20603	MGIID:	109490	Length:	366	Species:	Mus musculus

Alignment Length:	242	Identity:	71/242 - (29%)
Similarity:	108/242 - (44%)	Gaps:	42/242 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly    17 WP---GQSFSLKVKEVIHKEKSRFQDIQIVETETYGRCLILDGIIQCTARDEFSYQEMI------ 72
            ||   |:.....:.||::.|.|.:|:|:|:.::.:|..|||.|.:. .|..:.:|...|
Mouse   124 WPTADGRLVEYDIDEVVYDEDSPYQNIKILHSKQFGNILILSGDVN-LAESDLAYTRAIMGSGKE 187

  Fly    73 SFLPLCAHPNPKKVLIVGGGDGGVAREVVK-HPLVEEVHQVEIDDRVVELSKQYLPAMACGFANE 136
            .:       ..|.|||:||||||:..|:|| .|  :.|..||||..|::..|:|: ...||...:
Mouse   188 DY-------TGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYM-RRTCGDVLD 242

  Fly   137 KLK-----LTIGDGFDYMK---KHKNEFDVIITD------SSDPIGPAVSLFQESYYELMKHALK 187
            .|:     :.|.|....:|   |...|||.:|.|      |:.|...:...|.....:|....||
Mouse   243 NLRGDCYQVLIEDCIPVLKMYAKEGREFDYVINDLTAVPISTSPEEDSTWDFLRLILDLSMKVLK 307

  Fly   188 DDGIVCSQGGSFWLD--LDYIKKTMSG--CKEHFAKVAYAVTSVPSY 230
            .||...:||....|.  |...::.:..  |...|:|   .:..||||
Mouse   308 QDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEFSK---EIVCVPSY 351

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.