DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SpdS and srm

DIOPT Version :9

Sequence 1:NP_001247005.1 Gene:SpdS / 41167 FlyBaseID:FBgn0037723 Length:287 Species:Drosophila melanogaster
Sequence 2:XP_002939455.1 Gene:srm / 100489759 XenbaseID:XB-GENE-993102 Length:300 Species:Xenopus tropicalis


Alignment Length:282 Identity:156/282 - (55%)
Similarity:213/282 - (75%) Gaps:3/282 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LNNGWFSELQADLWPGQSFSLKVKEVIHKEKSRFQDIQIVETETYGRCLILDGIIQCTARDEFSY 68
            :.:|||.| ...|||||:.||:|:||::.::|.||:|.:..::|||..|:|||:||||.||||||
 Frog    15 VQDGWFRE-TCSLWPGQAMSLEVEEVLYHKQSSFQEILVFRSKTYGNVLVLDGLIQCTERDEFSY 78

  Fly    69 QEMISFLPLCAHPNPKKVLIVGGGDGGVAREVVKHPLVEEVHQVEIDDRVVELSKQYLPAMACGF 133
            ||||:.|||.:||||:||||:|||||||.|||||||.||.|.|.|||:.|:.:||:|||.||.|:
 Frog    79 QEMIANLPLYSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEEVINVSKKYLPGMAIGY 143

  Fly   134 ANEKLKLTIGDGFDYMKKHKNEFDVIITDSSDPIGPAVSLFQESYYELMKHALKDDGIVCSQGGS 198
            ::.||.|.:||||.:||::::.|||||||||||:|||.|||:||||:|||.||::.||:|.||..
 Frog   144 SSPKLTLHVGDGFQFMKQNQDAFDVIITDSSDPVGPAESLFKESYYQLMKTALREGGILCCQGEC 208

  Fly   199 FWLDLDYIKKTMSGCKEHFAKVAYAVTSVPSYPCGHIGFVMGSLNKNQDFATP--KLGKSEIDSI 261
            .||.||.||:....||..|..|.||..::|:||.|.|||::.|.:.:.:|..|  :|.:.::|.:
 Frog   209 QWLHLDLIKEMHQFCKTLFPVVEYAYCTIPTYPSGQIGFMLCSKDPSTNFKEPVQQLSQEQVDKM 273

  Fly   262 DLRYYSSEVHSAAFALPRWVQK 283
            :||||:|.:|.|||.||.:.:|
 Frog   274 NLRYYNSRIHQAAFVLPEFTRK 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SpdSNP_001247005.1 AdoMet_MTases 1..283 CDD:302624 155/280 (55%)
srmXP_002939455.1 PLN02366 15..298 CDD:215208 156/282 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 227 1.000 Domainoid score I2442
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H40514
Inparanoid 1 1.050 328 1.000 Inparanoid score I2418
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1059849at2759
OrthoFinder 1 1.000 - - FOG0002410
OrthoInspector 1 1.000 - - oto105225
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1601
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

Return to query results.
Submit another query.