DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Calr and CRT1b

DIOPT Version :10

Sequence 1:NP_524293.2 Gene:Calr / 41166 FlyBaseID:FBgn0005585 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_172392.1 Gene:CRT1b / 837441 AraportID:AT1G09210 Length:424 Species:Arabidopsis thaliana


Alignment Length:422 Identity:218/422 - (51%)
Similarity:279/422 - (66%) Gaps:31/422 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 IVLLATVGFISAEVYLKENFDNENWEDTWIYS--KHPGKEFGKFVLTPGTFYNDAEADKGIQTSQ 70
            ::|:..|...||.|..:|.|| :.||:.|:.|  |......|::..|.|.:..||. |||||||:
plant    11 LILIGLVAIASAAVIFEERFD-DGWENRWVKSEWKKDDNTAGEWKHTAGNWSGDAN-DKGIQTSE 73

  Fly    71 DARFYAASRKFDGFSNEDKPLVVQFSVKHEQNIDCGGGYVKLFDCSLDQTDMHGESPYEIMFGPD 135
            |.||||.|.:|..|||:||.||.||||||||.:||||||:||....:||....|::||.||||||
plant    74 DYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPD 138

  Fly   136 ICGPGTKKVHVIFSYKGKNHLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDW 200
            |||..|||||.|.:|...||||.||:.|:.|..||.||.|:|||.||.:||||.:.::|:|..||
plant   139 ICGYSTKKVHAILTYNEANHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDW 203

  Fly   201 DFLAPKKIKDPTATKPEDWDDRATIPDPDDKKPEDWDK-PEHIPDPDATKPEDWDDEMDGEWEPP 264
            |.|.|||||||:|.||||||::..|.||:||||:.:|. |:.|||.|:.||||||||.||||..|
plant   204 DLLPPKKIKDPSAKKPEDWDEQEYISDPEDKKPDGYDDIPKEIPDTDSKKPEDWDDEEDGEWTAP 268

  Fly   265 MIDNPEFKGEWQPKQLDNPNYKGAWEHPEIANPEYVPDDKLYLRKEICTLGFDLWQVKSGTIFDN 329
            .|.|||:.|||:|||:.||||||.||.|.|.||::..|.:||:..::..:|.:|||||||::|||
plant   269 TIPNPEYMGEWKPKQIKNPNYKGKWEAPLIDNPDFKDDPELYVFPKLKYVGLELWQVKSGSLFDN 333

  Fly   330 VLITDDVELAAKAAAEVKNTQAGEKKMKEAQ----DEVQRKKDEEEAKKA---SDKDDEDEDD-- 385
            |||.||.:.|.|.|.|...      |:|:|:    ||.::|.:|||:|.|   ||.:||.|||  
plant   334 VLICDDPDYAKKLADETWG------KLKDAEKAAFDEAEKKNEEEESKDAPAESDAEDEPEDDEG 392

  Fly   386 ----DDEEKDDESK-------QDKDQSEHDEL 406
                |.|.|.:|:|       .:||.:.||||
plant   393 GDDSDSESKAEETKSVDSEETSEKDATAHDEL 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalrNP_524293.2 Calreticulin 25..332 CDD:459737 176/309 (57%)
CRT1bNP_172392.1 Calreticulin 26..336 CDD:459737 176/311 (57%)

Return to query results.
Submit another query.