DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Calr and cnx-1

DIOPT Version :9

Sequence 1:NP_001262430.1 Gene:Calr / 41166 FlyBaseID:FBgn0005585 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_499176.1 Gene:cnx-1 / 176390 WormBaseID:WBGene00000567 Length:619 Species:Caenorhabditis elegans


Alignment Length:462 Identity:144/462 - (31%)
Similarity:205/462 - (44%) Gaps:119/462 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 EADKGIQTSQDARFYAASRKFD-GFSNEDKPLVVQFSVKHEQNIDCGGGYVKLFD--CSLDQTDM 122
            |.|.|:.....||.:|.:.|.: .|:.:....|||:.:|.|:..:|||||:||..  ...|..:.
 Worm   107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEKDLANF 171

  Fly   123 HGESPYEIMFGPDICGPGTKKVHVIFSYKGK-NHLISK---------DIRCKDDVYTHFYTLIVR 177
            ..::.|.||||||.|| .|.|||:||.||.. |..||:         .....||..||.:||:|:
 Worm   172 QDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDHNTHLFTLVVK 235

  Fly   178 PDNTYEVLIDNEKVESGNLEDDWD--FLAPKKIKDPTATKPEDWDDRATIPDPDDKKPEDWD--- 237
            |...|.|.:|.:.:..||:..|..  ...||:|.|.|..||.|||:|..|.|....||:|||   
 Worm   236 PTGEYSVSVDGKSLYYGNMMSDVTPALTPPKQIFDETDLKPVDWDERENIEDESAVKPDDWDENE 300

  Fly   238 ----------KP--------EHIPDPDATKPEDWDDEMDGEWEPPMIDNPEFK-----GEWQPKQ 279
                      ||        |.|.||:|.||:|||::|||.||.|:||||..|     |.|:...
 Worm   301 PQSVVDEAATKPYDWNEEENELIADPEAKKPQDWDEDMDGSWEAPLIDNPACKGLSGCGTWKAPT 365

  Fly   280 LDNPNYKGAWEHPEIANPEY-------VPDDKLYLRKE-------ICTLGFDLWQVKSGTIFDNV 330
            :.||.|||.|..|:|:||.:       :.|:..|...:       |..:|.::|.:....:|||:
 Worm   366 IKNPKYKGKWIRPKISNPAFKGKWTARLIDNPNYFEPKPFAGLAPITAVGIEMWTMSENILFDNI 430

  Fly   331 LITDDVELAA---------------KAAAEVKNTQAGEKKMKEAQDE------------------ 362
            |||...|.::               :.||...|.....:::.:|.:|                  
 Worm   431 LITSSEEDSSDVAKQTFYVKQKEEYRLAAATGNGNGFFQQIIDATNEKPWLWAVYILCVLLPLVA 495

  Fly   363 -------VQRKKDEEEAKKASDKDDEDED------DDDEEK---DDE-------------SKQDK 398
                   .|.|.....||| ||....|:|      |||||:   |:|             :.:.:
 Worm   496 IGVFCFGKQSKPTPNFAKK-SDAYSADDDRVPNLVDDDEEEIIGDEEDDVNQPGPSGSQSNPEPQ 559

  Fly   399 DQSEHDE 405
            |:.|:.|
 Worm   560 DEEENAE 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalrNP_001262430.1 Calreticulin 25..332 CDD:278680 116/325 (36%)
cnx-1NP_499176.1 Calreticulin 61..432 CDD:278680 116/325 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R163
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.