DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8319 and jim

DIOPT Version :10

Sequence 1:NP_649920.2 Gene:CG8319 / 41165 FlyBaseID:FBgn0037722 Length:383 Species:Drosophila melanogaster
Sequence 2:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster


Alignment Length:310 Identity:81/310 - (26%)
Similarity:117/310 - (37%) Gaps:85/310 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 FKCELCIKQFKRQINLLDHMKVHSNSH--VCQNCEERFLFKADLDNHQCYRNSNSTVECPECLKV 213
            |||..|.|.||::..||.|.::|:::.  .|..|.:||..::.|..|.....:.....||.|.:.
  Fly   329 FKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRS 393

  Fly   214 FSSTQSLDSHKCKDMQERSPFQCPHCQQAFTREQNLKAHLLIHAESKQ----GNGPH-------- 266
            |.....|:.| .:......||.||.|.:.|.::..|..|:..|.:...    .||||        
  Fly   394 FRQRAILNQH-IRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDV 457

  Fly   267 ----------------------------------------------------------------- 266
                                                                             
  Fly   458 PFPGEDNDTKGDIAGTGGGYHDEDSQGTPDGSGGMHYPSYFKDGKGQKILPEVLQHIGVRPANMP 522

  Fly   267 ---KCSYCQTGFFNKSALKVHIHAHMGERPHACPFCVSNFRSKQALKVHIRIHTGEKPYQCPHCP 328
               :|..|...|..|:.|..|...|:..||:.||.|...||.:..|..|:||||.|||:.|.:||
  Fly   523 LYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCP 587

  Fly   329 KTFSDNNNLAKHRRRHSDERPYKCSICLQDFREKHHLKRHFLGKHRDGDQ 378
            :.|.....|.:|.|.|:.|:||||..|.:|||:|..|.:|  .:...||:
  Fly   588 RFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQH--TRTHQGDR 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8319NP_649920.2 zf-AD 4..79 CDD:462262
COG5048 <153..368 CDD:227381 76/296 (26%)
C2H2 Zn finger 153..173 CDD:275368 8/19 (42%)
C2H2 Zn finger 179..196 CDD:275368 5/16 (31%)
C2H2 Zn finger 207..227 CDD:275370 6/19 (32%)
C2H2 Zn finger 236..256 CDD:275368 6/19 (32%)
C2H2 Zn finger 268..288 CDD:275368 6/19 (32%)
C2H2 Zn finger 296..316 CDD:275368 8/19 (42%)
C2H2 Zn finger 324..344 CDD:275368 7/19 (37%)
C2H2 Zn finger 352..368 CDD:275368 7/15 (47%)
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 8/19 (42%)
COG5048 355..666 CDD:227381 70/284 (25%)
C2H2 Zn finger 359..379 CDD:275368 6/19 (32%)
C2H2 Zn finger 387..407 CDD:275368 6/20 (30%)
C2H2 Zn finger 415..435 CDD:275368 6/19 (32%)
C2H2 Zn finger 527..547 CDD:275368 6/19 (32%)
C2H2 Zn finger 555..575 CDD:275368 8/19 (42%)
C2H2 Zn finger 583..603 CDD:275368 7/19 (37%)
C2H2 Zn finger 611..631 CDD:275368 8/21 (38%)
C2H2 Zn finger 639..661 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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