DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8312 and ldlrap1

DIOPT Version :10

Sequence 1:NP_649918.1 Gene:CG8312 / 41163 FlyBaseID:FBgn0037720 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_001017114.1 Gene:ldlrap1 / 549868 XenbaseID:XB-GENE-954261 Length:309 Species:Xenopus tropicalis


Alignment Length:264 Identity:64/264 - (24%)
Similarity:96/264 - (36%) Gaps:83/264 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 FKVSYLGNVLTGWAKAGE---GCVEKQLNTLWRNYTQHSKPDVIMRLKVCASG--LKATTRQHGL 323
            |.:.|||..|....|..|   ..|::.:.|...:..:..|  ||  |||...|  |........:
 Frog    47 FHLKYLGMTLVEQPKGEELSATAVKRIVATAKASGKKLQK--VI--LKVSPRGIILYDLASNQLI 107

  Fly   324 TEYWAHRITYCCAPKNYPRVFCWIYRHEGRKLKHELRCHAVLCSKEKIAQDICDTL--------- 379
            .....:||:||.|.|.:.:||.:|.:.:..:   .|.|||.||:|.|:||.:..|:         
 Frog   108 ENVSIYRISYCTADKMHDKVFAYIAQSQQNE---TLECHAFLCTKRKMAQAVTLTVAQAFKVAFE 169

  Fly   380 -----RENLESALREFKREK--------------------ILKQNARLSLA-------------- 405
                 |||.|      ||||                    .||.:|..:|.              
 Frog   170 FWQVSRENKE------KREKSGSDGEGASSSQSDGSSSITSLKASASANLLDLEDCAKAFDALNA 228

  Fly   406 --NAVYD----NPSLPRRKIM--LSVGGNNYRPPLERSKSAPKLMAI---------EEAIGEEEG 453
              |.:.|    |.|.....|:  |..|.:.....|..|::.|:::.|         ||.:.....
 Frog   229 SDNHIEDLFRQNESNENNNIVWALDDGLDEAFSRLAESRTNPQVLDIGLTANDLQSEECLSPSSW 293

  Fly   454 DEIE 457
            |::|
 Frog   294 DKLE 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8312NP_649918.1 PID_2 263..442 CDD:405418 59/238 (25%)
ldlrap1NP_001017114.1 PTB_LDLRAP-mammal-like 43..165 CDD:269981 37/124 (30%)

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