DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8312 and ldlrap1a

DIOPT Version :10

Sequence 1:NP_649918.1 Gene:CG8312 / 41163 FlyBaseID:FBgn0037720 Length:866 Species:Drosophila melanogaster
Sequence 2:NP_945331.1 Gene:ldlrap1a / 368278 ZFINID:ZDB-GENE-030328-13 Length:287 Species:Danio rerio


Alignment Length:280 Identity:58/280 - (20%)
Similarity:113/280 - (40%) Gaps:45/280 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 DLLYGSRQEHVGRTGGYDQNDQLTSKAYRT-LTRSLGKLWRRTHSVDISTPDPEFKVSYLGNVLT 274
            |:|..:|:..:       ::..||.:::.: ..:.|.:.|..|....:.  ...|.:.:||..|.
Zfish     2 DVLKSARRAFI-------RSPSLTKQSWSSGKHKKLPENWTDTRETLLE--GMTFNLRHLGMTLV 57

  Fly   275 GWAKAGE---GCVEKQLNTLWRNYTQHSKPDVIMRLKVCASG--LKATTRQHGLTEYWAHRITYC 334
            ...|..|   ..|::.:.|...:..:..|    :.|||...|  |..:.....:.....:||:||
Zfish    58 DQPKGEELSAAAVKRIVATAKASGKKLPK----VALKVSPQGIILYDSVSNQLIENISIYRISYC 118

  Fly   335 CAPKNYPRVFCWIYRHEGRKLKHELRCHAVLCSKEKIAQDICDTLRENLESALREFKREKILKQN 399
            .|.|.:.:||.:|.:::..:   .|.|||.||:|.|:|:.:..|:.:....|   |:..::.|..
Zfish   119 TADKTHDKVFAFIAQNQQNE---TLECHAFLCAKRKVAKAVTLTVAQAFRVA---FEFWEVAKDE 177

  Fly   400 ARLSLANAVYDNPSLPRRKIMLS---VGG---------NNYRP-------PLERSKSAPKLMAIE 445
            .:...|... .|.|...|.:.|:   ||.         .:|..       |:|.:.:...|..::
Zfish   178 KKWDSAGET-SNSSQSDRSVSLTSLKVGAAATENLLEIEDYTSALEDVDNPIEPNNNNTTLWEMD 241

  Fly   446 EAIGEEEGDEIEDTNEPEMM 465
            :.:.|......|....|:::
Zfish   242 DGLEEAFSRLAESRTNPQVL 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8312NP_649918.1 PID_2 263..442 CDD:405418 46/202 (23%)
ldlrap1aNP_945331.1 PTB_LDLRAP-mammal-like 43..165 CDD:269981 33/130 (25%)

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