DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8301 and znf180

DIOPT Version :9

Sequence 1:NP_649915.1 Gene:CG8301 / 41160 FlyBaseID:FBgn0037717 Length:607 Species:Drosophila melanogaster
Sequence 2:NP_001072533.1 Gene:znf180 / 779988 XenbaseID:XB-GENE-5829966 Length:500 Species:Xenopus tropicalis


Alignment Length:349 Identity:108/349 - (30%)
Similarity:152/349 - (43%) Gaps:37/349 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 LKSSHVEKQHACGVCGKKYGDRHNLRHHVEKYHSETDFECALCEKRFYTRKSLNYHMKWHNPDRQ 302
            |.|...||.:.|..|||.:....:|..|...:..|..:.|..|.|.|.....|..|.:.|..::.
 Frog   182 LNSHTTEKYYTCTECGKGFNRSSHLLRHKRIHIGERPYFCGKCGKSFIDSSQLVIHKRTHTGEKP 246

  Fly   303 FKCRHSGCERLFISQRHLMCHEATHSGTSSRKSEHCGFCGKTFIHLKTLRWHIYRQHGGEKPYKC 367
            :.|  |.||:.||.:.||:.|:.:|:|   .:...|..|||.|.....|..|: |.|.|||||.|
 Frog   247 YAC--SDCEKSFICKLHLVRHQRSHTG---ERPYVCSKCGKGFAQSSNLLTHL-RTHTGEKPYSC 305

  Fly   368 ANCTEVFASYAEKRIHMLERHRENLTAIERSECMLCRQPFSSEPDLIHHMSAEHLQRPGAPIIAN 432
            |.|.:.|.    :|.|:: ||:...|......|..|.:.|:....|:.|......::|       
 Frog   306 AQCGKSFI----RRSHVI-RHQRIHTGEGPYGCTECGKSFTESSALLKHQRTHTGEKP------- 358

  Fly   433 NKRVLQQKRERQYSGLFQCGSCSQRFNMKSALERHAAVHSEKDRPHACPHCSKRFKRAQDMKWHI 497
                            :.|..|.:.|..||||..|...|: .:||:.|..|.|.|..:..:..|.
 Frog   359 ----------------YACTQCPKSFMDKSALANHQRTHT-GERPYPCRDCGKSFSHSSALVKHQ 406

  Fly   498 KTHEKEKPNVCDVCGKAFALKYVLTQHRLSHEVLEKNFKCNVCGRAYLFEKSLRLHQRTHTGKTY 562
            :.|..|||..|..|.|:|:....|..|:.:| ..||.|.|..||:.:....||..|||||||:..
 Frog   407 RIHTGEKPYACGKCEKSFSQTSALVNHQRTH-TGEKPFACTDCGKCFTQTSSLVKHQRTHTGERP 470

  Fly   563 YKCDLCQERFVTHIKLKTHMQKAH 586
            |.|..|.:.|.....|..| |:.|
 Frog   471 YTCSECGKSFTYSSVLVKH-QRTH 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8301NP_649915.1 zf-AD 3..87 CDD:285071
COG5048 198..>508 CDD:227381 78/269 (29%)
C2H2 Zn finger 221..241 CDD:275368 1/2 (50%)
C2H2 Zn finger 249..269 CDD:275368 6/19 (32%)
C2H2 Zn finger 277..297 CDD:275368 6/19 (32%)
C2H2 Zn finger 305..327 CDD:275368 9/21 (43%)
C2H2 Zn finger 338..359 CDD:275368 8/20 (40%)
C2H2 Zn finger 367..384 CDD:275368 5/16 (31%)
C2H2 Zn finger 400..420 CDD:275368 5/19 (26%)
C2H2 Zn finger 451..471 CDD:275368 8/19 (42%)
C2H2 Zn finger 480..500 CDD:275368 5/19 (26%)
C2H2 Zn finger 508..528 CDD:275368 6/19 (32%)
C2H2 Zn finger 537..557 CDD:275368 8/19 (42%)
C2H2 Zn finger 565..582 CDD:275368 4/16 (25%)
znf180NP_001072533.1 KRAB 13..54 CDD:307490
COG5048 189..465 CDD:227381 93/311 (30%)
C2H2 Zn finger 193..213 CDD:275368 6/19 (32%)
C2H2 Zn finger 221..241 CDD:275368 6/19 (32%)
C2H2 Zn finger 249..269 CDD:275368 9/21 (43%)
C2H2 Zn finger 277..297 CDD:275368 8/20 (40%)
C2H2 Zn finger 305..325 CDD:275368 8/24 (33%)
C2H2 Zn finger 333..353 CDD:275368 5/19 (26%)
C2H2 Zn finger 361..381 CDD:275368 8/19 (42%)
C2H2 Zn finger 389..409 CDD:275368 5/19 (26%)
C2H2 Zn finger 417..437 CDD:275368 6/19 (32%)
C2H2 Zn finger 445..465 CDD:275368 8/19 (42%)
zf-H2C2_2 457..482 CDD:316026 13/24 (54%)
C2H2 Zn finger 473..493 CDD:275368 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24377
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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