DRSC/TRiP Functional Genomics Resources

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Protein Alignment Son and DCL1

DIOPT Version :10

Sequence 1:NP_649914.1 Gene:Son / 41159 FlyBaseID:FBgn0037716 Length:874 Species:Drosophila melanogaster
Sequence 2:NP_001184881.1 Gene:DCL1 / 839574 AraportID:AT1G01040 Length:1910 Species:Arabidopsis thaliana


Alignment Length:523 Identity:94/523 - (17%)
Similarity:180/523 - (34%) Gaps:160/523 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 NSNELGNNDESGESESSASADDKKNIKPVKSSNEILAELFGVFNAAPPEELLDDNLFK---KKKK 132
            |...|.||..|         |....|..|..:.:::|:          |.:.::.|.|   |:.:
plant    69 NGGGLPNNGVS---------DTNSQINEVTVTPQVIAK----------ETVKENGLQKNGGKRDE 114

  Fly   133 VKKEKKDKKAKKKKTTKSDGECSDSEAEGKHKHKRKKHKHKDIRVKDKEKDRDRDKSKEKDRDRV 197
            ..||:.||..|:.:......|.|:....|.                                   
plant   115 FSKEEGDKDRKRARVCSYQSERSNLSGRGH----------------------------------- 144

  Fly   198 TDKSKEKDRDRDRDRDKSKDKFTAAQAPSEKEKEKSESRKRSAVEPSSHSEKRERHEREKHRDWE 262
            .:.|:|.||..:|.|.::.|     :|.:.|:|.:            .::.:|:..:||....||
plant   145 VNNSREGDRFMNRKRTRNWD-----EAGNNKKKRE------------CNNYRRDGRDREVRGYWE 192

  Fly   263 RER-----------EREKEHERERVRSNNSFYNGQREADRLKGSESASTKSRQEQDLSDISLSDE 316
            |::           ..|.:|||:..:.:    .|.||.| :|..|:   ||:.|:....:.....
plant   193 RDKVGSNELVYRSGTWEADHERDVKKVS----GGNRECD-VKAEEN---KSKPEERKEKVVEEQA 249

  Fly   317 ESYLREKASNGRRRAHNSFYDE---KEELSVSPKRNVRESNTRRNRKSRSRSRDLGIDKKRLLEI 378
            ..|..:.....:.:...:|.:.   |..:::...::|.:....:|||                  
plant   250 RRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSQNRK------------------ 296

  Fly   379 ARRNAINMFKQGTMPGVANMTAEVKDKVLVKM-RYGGRTIQDLTD-------FCKK---ISNGDG 432
                .:::|....:|.|......::::...:: .|.|...||..|       |..|   :.....
plant   297 ----MLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDSRRWQREFESKQVLVMTAQI 357

  Fly   433 LSDLSSE-----EESD---VDKNGNAKVFHHPFQL----------KEREPIVMHIRNSTALVPAP 479
            |.::...     |..|   :|:..:| |..||:.|          |::.|.:.      .:..:|
plant   358 LLNILRHSIIRMETIDLLILDECHHA-VKKHPYSLVMSEFYHTTPKDKRPAIF------GMTASP 415

  Fly   480 PRLDEQTKAITMQFPVSSGQTHRNNEVWVPVDPK--DSLVPLPS--LPPAKQATNMFK--ETPKN 538
            ..|...:..:.....:.:.:|..::.|....|.|  :..||:||  :....:|..|:.  ||.|.
plant   416 VNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQ 480

  Fly   539 VFA 541
            :.|
plant   481 MIA 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SonNP_649914.1 PHA03247 <455..627 CDD:223021 21/103 (20%)
G-patch 705..747 CDD:396249
DSRM_SON-like 798..872 CDD:380699
DCL1NP_001184881.1 SF-CC1 111..>219 CDD:273721 29/159 (18%)
DEXHc_dicer 248..447 CDD:350792 32/227 (14%)
SF2_C_dicer 645..775 CDD:350189
Dicer_dimer 840..927 CDD:460900
PAZ_CAF_like 1177..1321 CDD:239210
RIBOc 1358..1537 CDD:238333
RIBOc 1576..1731 CDD:238333
DSRM 1735..1785 CDD:214634
DSRM_DCL_plant 1838..1907 CDD:380698
Blue background indicates that the domain is not in the aligned region.

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