DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and IMPA-6

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_973743.1 Gene:IMPA-6 / 839517 AraportID:AT1G02690 Length:539 Species:Arabidopsis thaliana


Alignment Length:540 Identity:232/540 - (42%)
Similarity:328/540 - (60%) Gaps:37/540 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TSMEQNRLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNV---PNLDSNTDEEEQLSS 63
            |.:.:||.:    ...|.||.||||.:..||:|||||||.:.|:|..   |::.|...::  .||
plant     9 TEVRRNRYK----VSVDADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQPGQD--FSS 67

  Fly    64 SID----LKKLAKAAADATKPEQ--QLAAVQAARKLLSSDKNPPINDLIQSDILPILVECLKQHN 122
            |:.    |:.:.:..|.....::  ||.|..:.|:|||.::|||||:::||.::|.:|:.|.:.:
plant    68 SLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQFLSRDD 132

  Fly   123 HTMLQFEAAWALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLR 187
            .|.|||||||||||||||||..|..::.:||||||::||:|.:..|.|||||||||:.||.|..|
plant   133 FTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAGDSPKCR 197

  Fly   188 DFVIKHGVVQPLLSFIKPDIPITFLRNVTWVIVNLCRNK-DPAPPTATIHEILPALNVLIHHTDT 251
            |.|:....:..||:.......::.|||.||.:.|.||.| .||....| ...||||..|:|.||.
plant   198 DHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQT-KAALPALERLLHSTDE 261

  Fly   252 NILVDTVWAISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQV 316
            .:|.|..||:|||:||.|::||.||::||:|:|:.||.:....|...|||.:||||||.|.|||.
plant   262 EVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLIPALRTIGNIVTGDDIQTQA 326

  Fly   317 VLNYDALSYFPGLL----SHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEF 377
            |::..||   ||||    :..|:.|:|||.|.:|||||||.||:|.|...|::..:|..|..|||
plant   327 VISSQAL---PGLLNLLKNTYKKSIKKEACWTISNITAGNTSQIQEVFQAGIIRPLINLLEIGEF 388

  Fly   378 QTQKEAAWAISNLTISGNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADS--- 439
            :.:|||.|||||.|..||.:|:..|:.:|.|.|.||||.|.|.:|:.|.|:||.|:|||.::   
plant   389 EIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDPRVVTVTLEGLENILKVGEAEKN 453

  Fly   440 -----HVEAVANCIEECEGLAKIERLQSHENVEIYKLAYEIIDQYFTDEGEQTNM----APTS-D 494
                 :....|..||:.:||.|||.||||:|.|||:.|.:|::.|:..:.|:.::    ||.: .
plant   454 LGNTGNDNLYAQMIEDADGLDKIENLQSHDNNEIYEKAVKILESYWAADDEEEDIGGVDAPENVQ 518

  Fly   495 GAQYNFDPHADRLTMNSFNF 514
            .:.:.|...:.......|||
plant   519 SSGFQFGNQSGNAPTGGFNF 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 30/89 (34%)
SRP1 8..500 CDD:227396 226/518 (44%)
ARM 104..224 CDD:237987 57/119 (48%)
armadillo repeat 104..137 CDD:293788 16/32 (50%)
armadillo repeat 145..181 CDD:293788 20/35 (57%)
armadillo repeat 187..222 CDD:293788 10/34 (29%)
ARM 236..350 CDD:237987 58/117 (50%)
armadillo repeat 239..264 CDD:293788 13/24 (54%)
armadillo repeat 272..308 CDD:293788 17/35 (49%)
armadillo repeat 314..348 CDD:293788 16/37 (43%)
ARM 315..433 CDD:237987 58/121 (48%)
armadillo repeat 356..390 CDD:293788 15/33 (45%)
armadillo repeat 399..433 CDD:293788 15/33 (45%)
Arm_3 442..485 CDD:292804 19/42 (45%)
IMPA-6NP_973743.1 ARM 248..361 CDD:237987 58/115 (50%)
armadillo repeat 249..274 CDD:293788 13/24 (54%)
armadillo repeat 282..318 CDD:293788 17/35 (49%)
armadillo repeat 324..359 CDD:293788 16/37 (43%)
armadillo repeat 367..403 CDD:293788 16/35 (46%)
ARM 368..500 CDD:237987 58/131 (44%)
armadillo repeat 410..444 CDD:293788 15/33 (45%)
IBB 8..97 CDD:280005 30/93 (32%)
SRP1 10..537 CDD:227396 228/536 (43%)
armadillo repeat 78..103 CDD:293788 5/24 (21%)
ARM 114..234 CDD:237987 57/119 (48%)
armadillo repeat 115..147 CDD:293788 16/31 (52%)
armadillo repeat 155..191 CDD:293788 20/35 (57%)
armadillo repeat 197..231 CDD:293788 10/33 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 47 1.000 Domainoid score I4518
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23316
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.930

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