DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and IMPA-4

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_172398.1 Gene:IMPA-4 / 837448 AraportID:AT1G09270 Length:538 Species:Arabidopsis thaliana


Alignment Length:521 Identity:225/521 - (43%)
Similarity:321/521 - (61%) Gaps:37/521 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 GKDQDEMRRRRNEVTVELRKNKREETILKRRNVPNLDSNTDEEEQLSSSIDLKKLAKAAAD---- 76
            |.|.||.||||.:..||:||||||:::||:|....:   ..::..|.:.:|..:.|.|...    
plant    19 GVDADEARRRREDNLVEIRKNKREDSLLKKRREGMM---LQQQLPLGAGLDGPQTAAAVEKRLEG 80

  Fly    77 ---------ATKPEQQLAAVQAARKLLSSDKNPPINDLIQSDILPILVECLKQHNHTMLQFEAAW 132
                     :..|:.||.|....|||||.:::|||:::|::.::|..||.|.:|:|..|||||||
plant    81 IPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPRFVEFLGRHDHPQLQFEAAW 145

  Fly   133 ALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVIKHGVVQ 197
            ||||:|||||..|..|:..||||:|::||.|.:.:|.|||||||||:.||.|..|:.|:.:|.::
plant   146 ALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWALGNVAGDSPNCRNLVLNYGALE 210

  Fly   198 PLLSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDTNILVDTVWAIS 262
            |||:.:..:..::.|||.||.:.|.||.|.|. |...:...||.|..||:..|..:|.|..||:|
plant   211 PLLAQLNENSKLSMLRNATWTLSNFCRGKPPT-PFEQVKPALPILRQLIYLNDEEVLTDACWALS 274

  Fly   263 YLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQVVLNYDALSYFP 327
            ||:||.||:||.|||:||.|:|:.|||:....|...|||.|||||||.|.|||.::....|.:..
plant   275 YLSDGPNDKIQAVIEAGVCPRLVELLGHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLY 339

  Fly   328 GLLS-HPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAWAISNLT 391
            .||: :.|:.|:|||.|.:|||||||:.|::||:..|::..::..|...||..:|||||||||.|
plant   340 NLLTQNHKKSIKKEACWTISNITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNAT 404

  Fly   392 ISGNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVAD--------SHVEAVANCI 448
            ..|:.||:..|:.:|.|.|.||||.|.|.:::.|.|:||.|:|||.:        |.|...|..|
plant   405 SGGSHEQIQYLVTQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQII 469

  Fly   449 EECEGLAKIERLQSHENVEIYKLAYEIIDQYFTDEGEQTNMAPTSDGAQYNFDPHADRLTMNSFN 513
            ||.:||.|:|.||||:|.|||:.|.:|:::|:.:|.|:..:   .||...|        :..:||
plant   470 EESDGLDKVENLQSHDNNEIYEKAVKILERYWAEEEEEQIL---QDGGNDN--------SQQAFN 523

  Fly   514 F 514
            |
plant   524 F 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 27/84 (32%)
SRP1 8..500 CDD:227396 221/505 (44%)
ARM 104..224 CDD:237987 58/119 (49%)
armadillo repeat 104..137 CDD:293788 17/32 (53%)
armadillo repeat 145..181 CDD:293788 20/35 (57%)
armadillo repeat 187..222 CDD:293788 11/34 (32%)
ARM 236..350 CDD:237987 56/114 (49%)
armadillo repeat 239..264 CDD:293788 11/24 (46%)
armadillo repeat 272..308 CDD:293788 20/35 (57%)
armadillo repeat 314..348 CDD:293788 12/34 (35%)
ARM 315..433 CDD:237987 51/118 (43%)
armadillo repeat 356..390 CDD:293788 14/33 (42%)
armadillo repeat 399..433 CDD:293788 14/33 (42%)
Arm_3 442..485 CDD:292804 20/42 (48%)
IMPA-4NP_172398.1 SRP1 17..536 CDD:227396 225/521 (43%)
armadillo repeat 81..106 CDD:293788 5/24 (21%)
armadillo repeat 118..150 CDD:293788 17/31 (55%)
armadillo repeat 158..194 CDD:293788 20/35 (57%)
armadillo repeat 200..234 CDD:293788 11/33 (33%)
armadillo repeat 251..276 CDD:293788 11/24 (46%)
armadillo repeat 284..320 CDD:293788 20/35 (57%)
armadillo repeat 326..361 CDD:293788 12/34 (35%)
armadillo repeat 369..405 CDD:293788 15/35 (43%)
armadillo repeat 412..446 CDD:293788 14/33 (42%)
armadillo repeat 466..500 CDD:293788 18/33 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 47 1.000 Domainoid score I4518
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23316
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.930

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