DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and IMPA-2

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_001154239.1 Gene:IMPA-2 / 827302 AraportID:AT4G16143 Length:535 Species:Arabidopsis thaliana


Alignment Length:539 Identity:240/539 - (44%)
Similarity:330/539 - (61%) Gaps:39/539 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 TSMEQNRLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNVPNLDSNTDEEEQL----- 61
            |.:.:||.:    ...|.:|.||||.:..||:||:||||::.|:|. ..|.:|     ||     
plant     9 TEVRRNRYK----VAVDAEEGRRRREDNMVEIRKSKREESLQKKRR-EGLQAN-----QLPQFAP 63

  Fly    62 -----SSSIDLKKLAKAAAD-----ATKPEQQLAAVQAARKLLSSDKNPPINDLIQSDILPILVE 116
                 ||::: |||....|.     :.....||.|....|||||.:::|||.::|.:.::|..||
plant    64 SPVPASSTVE-KKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFVE 127

  Fly   117 CLKQHNHTMLQFEAAWALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIG 181
            .|.:.::..|||||||||||||||||..|..|:..||||:|:|||.|.:.:|.|||||||||:.|
plant   128 FLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVREQAVWALGNVAG 192

  Fly   182 DGPLLRDFVIKHGVVQPLLSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLI 246
            |.|..||.|:..|.:.||||.:.....::.|||.||.:.|.||.| |.||...:...||||..||
plant   193 DSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGK-PQPPFDQVRPALPALERLI 256

  Fly   247 HHTDTNILVDTVWAISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSD 311
            |.||..:|.|..||:|||:||.||:||.|||:||||:|:.||.:....|...|||::||||||.|
plant   257 HSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQHQSPSVLIPALRSIGNIVTGDD 321

  Fly   312 EQTQVVLNYDALSYFPGLLSH-PKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKG 375
            .|||.|:::.||.....||:| .|:.|:|||.|.:|||||||:.|:|||...||:..::..|...
plant   322 LQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVCEAGLICPLVNLLQNA 386

  Fly   376 EFQTQKEAAWAISNLTISGNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSH 440
            ||..:|||||||||.|..|:.:|:..::::||:.|.||||.|.|.::|.|.|:||.|:|||.::.
plant   387 EFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVKPLCDLLVCPDPRIITVCLEGLENILKVGEAE 451

  Fly   441 --------VEAVANCIEECEGLAKIERLQSHENVEIYKLAYEIIDQYFTDEGEQTNMAPTSDGAQ 497
                    |...|..|::.|||.|||.||||:|.|||:.|.:|::.|:.:|.::| :.|....||
plant   452 KVTGNTGDVNFYAQLIDDAEGLEKIENLQSHDNSEIYEKAVKILETYWLEEEDET-LPPGDPSAQ 515

  Fly   498 -YNFDPHAD-RLTMNSFNF 514
             :.|....| .:....|||
plant   516 GFQFGGGNDAAVPPGGFNF 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 31/95 (33%)
SRP1 8..500 CDD:227396 233/516 (45%)
ARM 104..224 CDD:237987 60/119 (50%)
armadillo repeat 104..137 CDD:293788 15/32 (47%)
armadillo repeat 145..181 CDD:293788 21/35 (60%)
armadillo repeat 187..222 CDD:293788 13/34 (38%)
ARM 236..350 CDD:237987 61/114 (54%)
armadillo repeat 239..264 CDD:293788 14/24 (58%)
armadillo repeat 272..308 CDD:293788 19/35 (54%)
armadillo repeat 314..348 CDD:293788 15/34 (44%)
ARM 315..433 CDD:237987 55/118 (47%)
armadillo repeat 356..390 CDD:293788 16/33 (48%)
armadillo repeat 399..433 CDD:293788 14/33 (42%)
Arm_3 442..485 CDD:292804 20/42 (48%)
IMPA-2NP_001154239.1 IBB 8..99 CDD:280005 32/100 (32%)
SRP1 10..535 CDD:227396 239/538 (44%)
armadillo repeat 79..104 CDD:293788 5/24 (21%)
ARM 114..235 CDD:237987 60/120 (50%)
armadillo repeat 116..148 CDD:293788 15/31 (48%)
armadillo repeat 156..192 CDD:293788 21/35 (60%)
armadillo repeat 198..232 CDD:293788 13/33 (39%)
ARM 248..403 CDD:237987 83/154 (54%)
armadillo repeat 249..274 CDD:293788 14/24 (58%)
armadillo repeat 285..359 CDD:293788 37/73 (51%)
armadillo repeat 367..403 CDD:293788 17/35 (49%)
ARM 368..499 CDD:237987 57/130 (44%)
armadillo repeat 410..444 CDD:293788 14/33 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 47 1.000 Domainoid score I4518
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23316
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.930

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