DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and IMPA-7

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_001319482.1 Gene:IMPA-7 / 819741 AraportID:AT3G05720 Length:528 Species:Arabidopsis thaliana


Alignment Length:508 Identity:214/508 - (42%)
Similarity:288/508 - (56%) Gaps:47/508 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 RRRRNEVTVELRKNKREETILKRRN--VPNLDSNTDEEEQLSSSIDLKKLAKAAADATKPEQQLA 85
            ||||.:..||:||.||||::||:|.  :|:..|        :.|:|.|.::...:|  :.:..:.
plant    24 RRRREDDMVEIRKAKREESLLKKRREALPHSPS--------ADSLDQKLISCIWSD--ERDLLIE 78

  Fly    86 AVQAARKLLSSDK-NPPINDLIQSDILPILVECLKQHNHTMLQFEAAWALTNIASGTSAQTNEVV 149
            |....|.||..:. |..:.::||:.::|..||.|...:...|||||||||||||||||..|..|:
plant    79 ATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSPQLQFEAAWALTNIASGTSENTEVVI 143

  Fly   150 AAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVIKHGVVQPLLSFIKPDIPITFLRN 214
            ..|||.:.::|||||...|.||.|||||||.||.|..||.|:.|..:..||..:.....::.|.|
plant   144 DHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDIVLGHAALPSLLLQLNHGAKLSMLVN 208

  Fly   215 VTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDTNILVDTVWAISYLTDGGNDQIQMVIESG 279
            ..|.:.||||.| |.||...:...||||..||...|..:|..|.||:.||:||.|::||.|||:.
plant   209 AAWTLSNLCRGK-PQPPFDQVSAALPALAQLIRLDDKELLAYTCWALVYLSDGSNEKIQAVIEAN 272

  Fly   280 VVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQVVLNYDALSYFPGLLSHPKEK-IRKEAVW 343
            |..:||.|..:....|.|.|||.:||||||:|.|||.:::..||.....||.....| |||||.|
plant   273 VCARLIGLSIHRSPSVITPALRTIGNIVTGNDSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACW 337

  Fly   344 FLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAWAISNLTISGNREQVFTLIKEGVI 408
            .:||||||.|||:|||.:..:.|.::..|...|...:|||||||.|....|:.:|:..|:|:..|
plant   338 TVSNITAGCQSQIQAVFDADICPALVNLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECI 402

  Fly   409 PPFCDLLSCQDTQVINVVLDGLNNMLKVAD----SHVEAVANC-----------IEECEGLAKIE 458
            .|.||||:|.|||::.|.|:.|..:|||.:    .|.|.:..|           |||.|||.|||
plant   403 KPLCDLLTCSDTQLVMVCLEALKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIE 467

  Fly   459 RLQSHENVEIYKLAYEIIDQYFTDEGEQ----------------TNMAPTSDG 495
            .||||||.:||:.|.:|::.|:.:|.|:                .|| |||.|
plant   468 GLQSHENNDIYETAVKILETYWMEEEEEEDQEQQDMIYFPVDNFANM-PTSSG 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 22/66 (33%)
SRP1 8..500 CDD:227396 214/508 (42%)
ARM 104..224 CDD:237987 57/119 (48%)
armadillo repeat 104..137 CDD:293788 16/32 (50%)
armadillo repeat 145..181 CDD:293788 20/35 (57%)
armadillo repeat 187..222 CDD:293788 9/34 (26%)
ARM 236..350 CDD:237987 54/114 (47%)
armadillo repeat 239..264 CDD:293788 11/24 (46%)
armadillo repeat 272..308 CDD:293788 17/35 (49%)
armadillo repeat 314..348 CDD:293788 14/34 (41%)
ARM 315..433 CDD:237987 52/118 (44%)
armadillo repeat 356..390 CDD:293788 13/33 (39%)
armadillo repeat 399..433 CDD:293788 15/33 (45%)
Arm_3 442..485 CDD:292804 23/53 (43%)
IMPA-7NP_001319482.1 SRP1 24..489 CDD:227396 205/475 (43%)
armadillo repeat 62..86 CDD:293788 4/25 (16%)
armadillo repeat 99..131 CDD:293788 16/31 (52%)
armadillo repeat 139..175 CDD:293788 20/35 (57%)
armadillo repeat 181..216 CDD:293788 9/34 (26%)
armadillo repeat 232..257 CDD:293788 11/24 (46%)
armadillo repeat 265..301 CDD:293788 17/35 (49%)
armadillo repeat 307..342 CDD:293788 14/34 (41%)
armadillo repeat 350..387 CDD:293788 14/36 (39%)
armadillo repeat 393..427 CDD:293788 15/33 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23316
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.930

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