DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kap-alpha3 and Kpna7

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:XP_038946019.1 Gene:Kpna7 / 690504 RGDID:1594749 Length:600 Species:Rattus norvegicus


Alignment Length:502 Identity:205/502 - (40%)
Similarity:302/502 - (60%) Gaps:16/502 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 QNRLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNVPNLDSNTDEEEQL-SSSIDLKK 69
            :.||:.||.:||:....|::|.:.:::|||::::|..|||||:....|:...:..: .:::.|..
  Rat     8 EERLKKFKYRGKEMSLRRQQRIDSSLQLRKSRKDEQALKRRNIGLFSSDVVSQALVKEANLTLDD 72

  Fly    70 LAKAAADATKPEQQLAAVQAARKLLSSDKNPPINDLIQSDILPILVECLKQHNHTMLQFEAAWAL 134
            :.| ..:::.....|.|.||||::||.:.|||::.:|::.::|.||:.||..:...|||||||||
  Rat    73 IIK-GVNSSDTIMCLLATQAAREMLSQENNPPLDVIIEAGLIPKLVDFLKAAHLPNLQFEAAWAL 136

  Fly   135 TNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVIKHGVVQPL 199
            ||||||||.||..||..||:...::||.||...|.||||||||||.||....||.||.:..:..|
  Rat   137 TNIASGTSEQTGVVVKEGAIEPLIELLCSPHLTVSEQAVWALGNIAGDCAEFRDNVISNNAIPHL 201

  Fly   200 LSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDTNILVDTVWAISYL 264
            ::.|..:||||||||:.|.:.||||||:|.||...:.::||.|..|:.|.|..||.||.||:|||
  Rat   202 INLISTNIPITFLRNIAWTLSNLCRNKNPYPPEDAVRQMLPTLCQLLLHHDNEILSDTCWALSYL 266

  Fly   265 TDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQVVLNYDALSYFPGL 329
            |:||.|.|..|:.:|::|:|:.|:.:||:.|.|..|..:||||.|::||||:|::...|.....:
  Rat   267 TEGGKDYIHHVVTTGILPRLVELMSSSELNVLTPCLHTMGNIVAGTNEQTQMVIDAGMLKVLGQV 331

  Fly   330 LSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAWAISNLTISG 394
            |.|||..|:|.|.|.:||:.||.:..||.:|...|||.::..|...|.:.||||...::|.....
  Rat   332 LRHPKSSIQKLAAWVMSNVAAGPRHHVQQLILCNLLPVLVNLLRNAELKVQKEAVCTVANFATGA 396

  Fly   395 NREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSHVEAVANC--IEECEGLAKI 457
            ::.|:..|...||:.|..:||:..|.:||.|:||.::.:|:..|...:....|  |||..|..||
  Rat   397 SQSQLTLLAYSGVLEPMLNLLTAPDMEVITVILDVISYLLQQIDDLEDKKRLCFQIEEVGGFEKI 461

  Fly   458 ERLQSHENVEIYKLAYEIIDQYFTDEGEQTNMAPTSDGAQYNFDPHA 504
            |.||.|.|..|...|..||::|..:|       |.|     :.||.|
  Rat   462 ESLQHHHNSYISHSALNIIEKYLYEE-------PCS-----SLDPFA 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 22/81 (27%)
SRP1 8..500 CDD:227396 202/494 (41%)
ARM 104..224 CDD:237987 63/119 (53%)
armadillo repeat 104..137 CDD:293788 16/32 (50%)
armadillo repeat 145..181 CDD:293788 20/35 (57%)
armadillo repeat 187..222 CDD:293788 15/34 (44%)
ARM 236..350 CDD:237987 51/113 (45%)
armadillo repeat 239..264 CDD:293788 13/24 (54%)
armadillo repeat 272..308 CDD:293788 14/35 (40%)
armadillo repeat 314..348 CDD:293788 13/33 (39%)
ARM 315..433 CDD:237987 41/117 (35%)
armadillo repeat 356..390 CDD:293788 12/33 (36%)
armadillo repeat 399..433 CDD:293788 12/33 (36%)
Arm_3 442..485 CDD:292804 18/44 (41%)
Kpna7XP_038946019.1 SRP1 7..487 CDD:227396 199/479 (42%)
armadillo repeat 106..139 CDD:293788 16/32 (50%)
armadillo repeat 147..183 CDD:293788 20/35 (57%)
armadillo repeat 189..224 CDD:293788 15/34 (44%)
armadillo repeat 241..266 CDD:293788 13/24 (54%)
armadillo repeat 274..310 CDD:293788 14/35 (40%)
armadillo repeat 316..350 CDD:293788 13/33 (39%)
armadillo repeat 358..435 CDD:293788 26/76 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.930

Return to query results.
Submit another query.