DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and kpna1

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:XP_701359.5 Gene:kpna1 / 572542 ZFINID:ZDB-GENE-091116-39 Length:580 Species:Danio rerio


Alignment Length:517 Identity:233/517 - (45%)
Similarity:330/517 - (63%) Gaps:25/517 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNVPN-----------------LDSNT 55
            ||:::|||..:.|||||||.|..::|||.|::|.:.|||||..                 |:|..
Zfish    51 RLKSYKNKSLNTDEMRRRREEEGLQLRKQKKDEQLFKRRNVATVEEDGALEDDGMSDSGYLESQA 115

  Fly    56 DEEEQLSSSIDLKKLAKAAADATKPEQQLAAVQAARKLLSSDKNPPINDLIQS-DILPILVECLK 119
            :..:|::.|:..:.:.:... ::.|||||...|..|||||.:.||||:::|.: .::...||.||
Zfish   116 NNMDQITGSVISEDMIQMIF-SSSPEQQLIGTQRFRKLLSKEPNPPIDEVIATPGVVERFVEFLK 179

  Fly   120 QHNHTMLQFEAAWALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGP 184
            :..:..|||||||.|||||||||.||..|:.|||||:|:::|:|...:|.||||||||||.||..
Zfish   180 RRENCTLQFEAAWVLTNIASGTSHQTRVVIQAGAVPIFIEMLSSDFEDVQEQAVWALGNIAGDST 244

  Fly   185 LLRDFVIKHGVVQPLLSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHT 249
            ..||:|:...::..|:..:.....:|.:||..|.:.||||.|:|.|..|.:...|..|:.|:...
Zfish   245 ECRDYVLDCNILPSLVQLLAKQNRLTMMRNAVWALSNLCRGKNPPPDFAKVSPCLSVLSWLLFVN 309

  Fly   250 DTNILVDTVWAISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQT 314
            ||:||.|..||:|||:||.|::||.||:|||..:|:.||.::|.||.:.|||||||||||.|.||
Zfish   310 DTDILADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLLHAEYKVVSPALRAVGNIVTGDDLQT 374

  Fly   315 QVVLNYDALSYFPGLLSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQT 379
            ||:||..||.....|||.|||.|:|||.|.:|||||||::|:|.||:..|.|.:|..|...||:|
Zfish   375 QVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQMVIDADLFPPLISILQVAEFRT 439

  Fly   380 QKEAAWAISNLTISGNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVAD------ 438
            :|||||||:|.|..|:.||:..|::.|.|.|.||||:..|::::.|.|:||.|:|::.:      
Zfish   440 RKEAAWAITNATSGGSAEQIRHLVELGCIKPLCDLLTLMDSKIVQVALNGLENILRLGELEAKRG 504

  Fly   439 SHVEAVANCIEECEGLAKIERLQSHENVEIYKLAYEIIDQYFTDEGEQTNMAPTSDGAQYNF 500
            ..:......|||..||.|:|.||.|||.|||:.|:::|::||:.:.|..::||..|..|..|
Zfish   505 GGINPYCALIEEAYGLDKLEFLQGHENQEIYQKAFDLIERYFSTDDEDPSLAPAVDLQQQQF 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 32/96 (33%)
SRP1 8..500 CDD:227396 232/515 (45%)
ARM 104..224 CDD:237987 55/120 (46%)
armadillo repeat 104..137 CDD:293788 14/33 (42%)
armadillo repeat 145..181 CDD:293788 21/35 (60%)
armadillo repeat 187..222 CDD:293788 8/34 (24%)
ARM 236..350 CDD:237987 63/113 (56%)
armadillo repeat 239..264 CDD:293788 11/24 (46%)
armadillo repeat 272..308 CDD:293788 21/35 (60%)
armadillo repeat 314..348 CDD:293788 19/33 (58%)
ARM 315..433 CDD:237987 60/117 (51%)
armadillo repeat 356..390 CDD:293788 17/33 (52%)
armadillo repeat 399..433 CDD:293788 13/33 (39%)
Arm_3 442..485 CDD:292804 19/42 (45%)
kpna1XP_701359.5 IBB 47..147 CDD:280005 32/96 (33%)
SRP1 50..557 CDD:227396 228/506 (45%)
ARM 163..284 CDD:237987 55/120 (46%)
armadillo repeat 171..197 CDD:293788 13/25 (52%)
armadillo repeat 205..241 CDD:293788 21/35 (60%)
armadillo repeat 247..282 CDD:293788 8/34 (24%)
ARM 248..368 CDD:237987 52/119 (44%)
armadillo repeat 299..324 CDD:293788 11/24 (46%)
armadillo repeat 332..368 CDD:293788 21/35 (60%)
armadillo repeat 374..408 CDD:293788 19/33 (58%)
armadillo repeat 416..452 CDD:293788 18/35 (51%)
ARM 417..547 CDD:237987 55/129 (43%)
armadillo repeat 459..493 CDD:293788 13/33 (39%)
Arm_3 508..558 CDD:292804 21/49 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2158
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.860

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