DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and kpna5

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_001018163.1 Gene:kpna5 / 553205 ZFINID:ZDB-GENE-050522-22 Length:539 Species:Danio rerio


Alignment Length:515 Identity:237/515 - (46%)
Similarity:326/515 - (63%) Gaps:22/515 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNV---PNLDSNTD---EEEQLSSSID 66
            |::::|||..:..||||||.|..::|||.||||.:.|||||   |..:|..:   ::..:||::.
Zfish    13 RMKSYKNKALNPQEMRRRREEEGIQLRKQKREEQLFKRRNVSLPPGDESMLECPIQDPDVSSTVP 77

  Fly    67 LKKLAKAAADATK------PEQQLAAVQAARKLLSSDKNPPINDLIQS-DILPILVECLKQHNHT 124
            :........|..:      |:|||.|.|..|||||.:.||||:::|.: .::...||.|::.::.
Zfish    78 VSGEGVITQDVIQMIFSEDPDQQLIATQKFRKLLSKEPNPPIDEVIGTPGVVNRFVEFLRRSDNC 142

  Fly   125 MLQFEAAWALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDF 189
            .||||||||||||||||...|..|:..||||:|::||||...:|.||||||||||.||....||:
Zfish   143 TLQFEAAWALTNIASGTFQHTKVVIETGAVPIFIELLNSEYEDVQEQAVWALGNIAGDNAECRDY 207

  Fly   190 VIKHGVVQPLLSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDTNIL 254
            |:..|::..|...:.....:|..||..|.:.||||.|:|.|..|.:...|..|:.|:..:|.::|
Zfish   208 VLNCGILPSLQQLLAKSNRLTTTRNAVWALSNLCRGKNPPPDFAKVSPCLSVLSRLLFSSDPDVL 272

  Fly   255 VDTVWAISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQVVLN 319
            .|..||:|||:||.||:||.||:|||..:|:.||.:|:.||.:.|||||||||||.|.||||:||
Zfish   273 ADACWALSYLSDGPNDKIQTVIDSGVCRRLVELLMHSDYKVVSPALRAVGNIVTGDDIQTQVILN 337

  Fly   320 YDALSYFPGLLSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAA 384
            ..||.....|||.|||.|:|||.|.:|||||||::|:||||:..:.|.:||.|.|.||:|:||||
Zfish   338 CSALPCLLHLLSSPKESIKKEACWTVSNITAGNRAQIQAVIDSNVFPVLIEILQKAEFRTRKEAA 402

  Fly   385 WAISNLTISGNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSH-------VE 442
            |||:|.|..|..||:..|:....|.|.||||:..|::::.|.|:||.|:|::.:..       :.
Zfish   403 WAITNATSGGTPEQIRYLVSLNTIKPMCDLLTVMDSKIVQVALNGLENILRLGEQESKQNGTGIN 467

  Fly   443 AVANCIEECEGLAKIERLQSHENVEIYKLAYEIIDQYFTDEGEQTNMAPTSD--GAQYNF 500
            .....|||..||.|||.||||||.|||:.|:::|:.||..|.|..::.|..|  ..||.|
Zfish   468 PYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEEEDASIVPQVDQNQGQYIF 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 33/91 (36%)
SRP1 8..500 CDD:227396 236/513 (46%)
ARM 104..224 CDD:237987 55/120 (46%)
armadillo repeat 104..137 CDD:293788 14/33 (42%)
armadillo repeat 145..181 CDD:293788 22/35 (63%)
armadillo repeat 187..222 CDD:293788 9/34 (26%)
ARM 236..350 CDD:237987 62/113 (55%)
armadillo repeat 239..264 CDD:293788 9/24 (38%)
armadillo repeat 272..308 CDD:293788 21/35 (60%)
armadillo repeat 314..348 CDD:293788 19/33 (58%)
ARM 315..433 CDD:237987 61/117 (52%)
armadillo repeat 356..390 CDD:293788 19/33 (58%)
armadillo repeat 399..433 CDD:293788 12/33 (36%)
Arm_3 442..485 CDD:292804 22/42 (52%)
kpna5NP_001018163.1 IBB 9..105 CDD:280005 33/91 (36%)
SRP1 36..521 CDD:227396 223/484 (46%)
HEAT repeat 88..117 CDD:293787 11/28 (39%)
ARM 121..242 CDD:237987 55/120 (46%)
armadillo repeat 129..155 CDD:293788 13/25 (52%)
armadillo repeat 163..199 CDD:293788 22/35 (63%)
armadillo repeat 205..240 CDD:293788 9/34 (26%)
ARM 254..368 CDD:237987 62/113 (55%)
armadillo repeat 257..282 CDD:293788 9/24 (38%)
armadillo repeat 290..326 CDD:293788 21/35 (60%)
armadillo repeat 332..366 CDD:293788 19/33 (58%)
ARM 333..451 CDD:237987 61/117 (52%)
armadillo repeat 374..410 CDD:293788 20/35 (57%)
armadillo repeat 417..451 CDD:293788 12/33 (36%)
Arm_3 467..513 CDD:292804 23/45 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2158
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.860

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