DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and kpna3

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_001016060.1 Gene:kpna3 / 548814 XenbaseID:XB-GENE-953229 Length:521 Species:Xenopus tropicalis


Alignment Length:517 Identity:347/517 - (67%)
Similarity:411/517 - (79%) Gaps:8/517 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MEQNRLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNVPNLDSNTDEE---EQLSSSI 65
            :|.:|:::|||||:|.:.|||.|||||||||||||:|.:||:||||..:|..|.:   :..|.::
 Frog     7 LENHRIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDGDFKSQNV 71

  Fly    66 DLKKLAKAAADATKPEQQLAAVQAARKLLSSDKNPPINDLIQSDILPILVECLKQHNHTMLQFEA 130
            .|:.:.:.|. :..|..||:||||||||||||:||||:|||:|.||||||:||:..::..|||||
 Frog    72 TLEAILQNAT-SDNPAIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLEADDNPSLQFEA 135

  Fly   131 AWALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVIKHGV 195
            |||||||||||||||..||.:.||||||:||:|...||||||||||||||||||..||:||..||
 Frog   136 AWALTNIASGTSAQTQAVVQSNAVPLFLRLLHSLHQNVCEQAVWALGNIIGDGPQCRDYVISLGV 200

  Fly   196 VQPLLSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDTNILVDTVWA 260
            |:||||||.|.||||||||||||||||||||||.||..|:.||||||.|||:|||.|||||||||
 Frog   201 VKPLLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWA 265

  Fly   261 ISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQVVLNYDALSY 325
            :||||||||:||||||:|||||.|:|||.:.||||||||||||||||||:|||||||||.|.||:
 Frog   266 LSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDVLSH 330

  Fly   326 FPGLLSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAWAISNL 390
            |..||:||||||.|||||||||||||||.||||||:.||:|.||..|:||:|.||||||||||||
 Frog   331 FHNLLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNL 395

  Fly   391 TISGNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSHVEAVANCIEECEGLA 455
            ||||.::||..|:::.||||||.|||.:|:||:.||||||.|:|.:|......:|..||||.||.
 Frog   396 TISGRKDQVEYLVQQNVIPPFCSLLSVKDSQVVQVVLDGLKNILIMAGDEASTIAEIIEECGGLE 460

  Fly   456 KIERLQSHENVEIYKLAYEIIDQYFT--DEGEQTNMAP-TSDGAQYNFDPHADRLTMNSFNF 514
            |||.||.|||.||||||:|||||||:  |..|..::.| .:.|..|:|:| ...|....|||
 Frog   461 KIEALQQHENEEIYKLAFEIIDQYFSGDDIDEDQSLVPEATPGGTYHFEP-TTSLQTKEFNF 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 39/83 (47%)
SRP1 8..500 CDD:227396 340/497 (68%)
ARM 104..224 CDD:237987 91/119 (76%)
armadillo repeat 104..137 CDD:293788 22/32 (69%)
armadillo repeat 145..181 CDD:293788 25/35 (71%)
armadillo repeat 187..222 CDD:293788 28/34 (82%)
ARM 236..350 CDD:237987 93/113 (82%)
armadillo repeat 239..264 CDD:293788 20/24 (83%)
armadillo repeat 272..308 CDD:293788 29/35 (83%)
armadillo repeat 314..348 CDD:293788 26/33 (79%)
ARM 315..433 CDD:237987 84/117 (72%)
armadillo repeat 356..390 CDD:293788 24/33 (73%)
armadillo repeat 399..433 CDD:293788 20/33 (61%)
Arm_3 442..485 CDD:292804 29/44 (66%)
kpna3NP_001016060.1 SRP1 7..521 CDD:227396 345/515 (67%)
armadillo repeat 73..98 CDD:293788 11/25 (44%)
armadillo repeat 109..142 CDD:293788 22/32 (69%)
armadillo repeat 150..186 CDD:293788 25/35 (71%)
armadillo repeat 192..227 CDD:293788 28/34 (82%)
armadillo repeat 244..269 CDD:293788 20/24 (83%)
armadillo repeat 277..313 CDD:293788 29/35 (83%)
armadillo repeat 319..353 CDD:293788 26/33 (79%)
armadillo repeat 361..395 CDD:293788 24/33 (73%)
armadillo repeat 404..438 CDD:293788 20/33 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I8696
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 667 1.000 Inparanoid score I752
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 1 1.000 - - otm47547
Panther 1 1.100 - - LDO PTHR23316
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2405
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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