DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and kpna2

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:XP_012821932.1 Gene:kpna2 / 493517 XenbaseID:XB-GENE-979796 Length:528 Species:Xenopus tropicalis


Alignment Length:510 Identity:256/510 - (50%)
Similarity:343/510 - (67%) Gaps:21/510 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EMRRRRNEVTVELRKNKREETILKRRNVPNL-DSNT------DEEEQLSSSIDLKKLAKAAADAT 78
            ||||||.||.|||||.|:::.:||||||... |..|      ::..|.|:...::::.:..|.::
 Frog    24 EMRRRRIEVNVELRKAKKDDQMLKRRNVSTFPDEPTSPLQEKNQNGQTSTQWSVEEIVRGVASSS 88

  Fly    79 KPEQQLAAVQAARKLLSSDKNPPINDLIQSDILPILVECLKQHNHTMLQFEAAWALTNIASGTSA 143
            . |.||.|.||||||||.::.|||:.:||:.::|.||..|.:.:.:.:||||||||||||||||.
 Frog    89 L-EIQLQATQAARKLLSREREPPIDRIIQAGLIPKLVAFLARTDCSPIQFEAAWALTNIASGTSD 152

  Fly   144 QTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVIKHGVVQPLLSFI-KPDI 207
            ||..||..|.||.|:.||.||.|::.||||||||||.|||...||.|||||.|.|||:.: .||:
 Frog   153 QTKAVVEGGGVPAFISLLASPHPHISEQAVWALGNIAGDGSAYRDLVIKHGAVGPLLALLADPDL 217

  Fly   208 PIT---FLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDTNILVDTVWAISYLTDGGN 269
            ...   :||||||.:.||||||:||||...|.:|||.|..|:||.|..:|.||.||:||||||.|
 Frog   218 STLATGYLRNVTWTLSNLCRNKNPAPPLDAIQQILPTLVRLLHHDDREVLADTCWAVSYLTDGSN 282

  Fly   270 DQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQVVLNYDALSYFPGLLSHPK 334
            |:|.:|:.:|:||:::.|||..|:.:.|..||.|||||||:||||||||:..|||.|..||:|.|
 Frog   283 DRINVVVGTGLVPRIVQLLGCGELTIVTPCLRTVGNIVTGTDEQTQVVLDAGALSVFAELLTHHK 347

  Fly   335 EKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAWAISNLTISGNREQV 399
            ..|:|||.|.|||||||.|.|:|.|:|.||:|.:||.|.|.:::|||||.||::|.|..|..:|:
 Frog   348 NNIQKEAAWTLSNITAGRQDQIQEVVNHGLIPYLIEILRKADYKTQKEAIWAVTNYTSGGTIDQI 412

  Fly   400 FTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSHVEAVANC--IEECEGLAKIERLQS 462
            ..|::..||.|..:|||.:|::.:.|:||...|:...|:...|....|  :|||.||.:||.|||
 Frog   413 IYLVQCSVIEPLSNLLSVKDSKTVLVILDAFTNVFAAAEKLGETEKLCLMVEECGGLDRIEALQS 477

  Fly   463 HENVEIYKLAYEIIDQYFT-DEGEQTNMAP--TSDGAQYNFDPHADRLTMNSFNF 514
            |||.::||.:..:|::||: ::||..::||  ||||  |.|.....  |..:|||
 Frog   478 HENEQVYKASAGLIEKYFSAEDGEDESLAPETTSDG--YTFQVEGG--THTTFNF 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 29/73 (40%)
SRP1 8..500 CDD:227396 251/494 (51%)
ARM 104..224 CDD:237987 69/123 (56%)
armadillo repeat 104..137 CDD:293788 15/32 (47%)
armadillo repeat 145..181 CDD:293788 22/35 (63%)
armadillo repeat 187..222 CDD:293788 19/38 (50%)
ARM 236..350 CDD:237987 65/113 (58%)
armadillo repeat 239..264 CDD:293788 13/24 (54%)
armadillo repeat 272..308 CDD:293788 16/35 (46%)
armadillo repeat 314..348 CDD:293788 20/33 (61%)
ARM 315..433 CDD:237987 58/117 (50%)
armadillo repeat 356..390 CDD:293788 17/33 (52%)
armadillo repeat 399..433 CDD:293788 11/33 (33%)
Arm_3 442..485 CDD:292804 20/45 (44%)
kpna2XP_012821932.1 SRP1 20..516 CDD:227396 251/494 (51%)
armadillo repeat 114..146 CDD:293788 15/31 (48%)
armadillo repeat 154..190 CDD:293788 22/35 (63%)
armadillo repeat 196..235 CDD:293788 19/38 (50%)
armadillo repeat 252..277 CDD:293788 13/24 (54%)
armadillo repeat 285..321 CDD:293788 16/35 (46%)
armadillo repeat 327..361 CDD:293788 20/33 (61%)
armadillo repeat 369..403 CDD:293788 17/33 (52%)
armadillo repeat 412..446 CDD:293788 11/33 (33%)
armadillo repeat 459..494 CDD:293788 17/34 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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