DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and kpna6

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_001008018.1 Gene:kpna6 / 493380 XenbaseID:XB-GENE-946491 Length:534 Species:Xenopus tropicalis


Alignment Length:516 Identity:243/516 - (47%)
Similarity:333/516 - (64%) Gaps:22/516 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EQNRLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNV------------PNLDSNTDE 57
            |.:|:::||||..:.:||||||.|..::|||.|||:.:.|||||            |.:||....
 Frog     7 ENSRMKSFKNKALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELAPEDSSMFDGPLMDSYVSS 71

  Fly    58 EEQLSSSIDLKKLAKAAADATKPEQQLAAVQAARKLLSSDKNPPINDLIQS-DILPILVECLKQH 121
            .......|..:.:|...:|  .|:.|||..|..|||||.:.||||:::|.: .::...||.||:.
 Frog    72 TTPGDGVITREMVALLLSD--DPDLQLATTQKFRKLLSKEPNPPIDEVINAPGVVERFVEFLKKS 134

  Fly   122 NHTMLQFEAAWALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLL 186
            ::..|||||||||||||||||.||..|:.|||||:|:|||||...:|.||||||||||.||..:.
 Frog   135 DNYTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIQLLNSDYEDVQEQAVWALGNIAGDSSVC 199

  Fly   187 RDFVIKHGVVQPLLSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDT 251
            ||:|:...::.|||:.:.....:|..||..|.:.||||.|:|.|....:.:.||.|:.|:..:|:
 Frog   200 RDYVLSCDILPPLLNLLTKSTRLTMTRNAVWALSNLCRGKNPPPDFDKVSQCLPVLSRLLFSSDS 264

  Fly   252 NILVDTVWAISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQV 316
            ::|.|..||:|||:||.|::||.||:|||..:|:.||.:::.||.:.|||||||||||.|.||||
 Frog   265 DLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQV 329

  Fly   317 VLNYDALSYFPGLLSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQK 381
            :||..||.....|||.|||.|||||.|.:|||||||:.|:|||.:..:.|.:||.|.|.||:|:|
 Frog   330 ILNCSALPCLLHLLSSPKESIRKEACWTISNITAGNRGQIQAVADANIFPVLIEILQKAEFRTRK 394

  Fly   382 EAAWAISNLTISGNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSHVEAVAN 446
            ||||||:|.|..|..||:..|:..|.|.|.||||:..|::::.|.|:||.|:|::.:...:...|
 Frog   395 EAAWAITNATSGGTPEQIRYLVNLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKQGGN 459

  Fly   447 -----C--IEECEGLAKIERLQSHENVEIYKLAYEIIDQYFTDEGEQTNMAPTSDGAQYNF 500
                 |  |||..||.|||.||||||.|||:.|:|:|:.||..|.:...:.|:.|.:|..:
 Frog   460 GINPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFELIEHYFGVEEDDPQLVPSVDESQQQY 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 33/92 (36%)
SRP1 8..500 CDD:227396 242/511 (47%)
ARM 104..224 CDD:237987 61/120 (51%)
armadillo repeat 104..137 CDD:293788 15/33 (45%)
armadillo repeat 145..181 CDD:293788 24/35 (69%)
armadillo repeat 187..222 CDD:293788 10/34 (29%)
ARM 236..350 CDD:237987 62/113 (55%)
armadillo repeat 239..264 CDD:293788 10/24 (42%)
armadillo repeat 272..308 CDD:293788 20/35 (57%)
armadillo repeat 314..348 CDD:293788 20/33 (61%)
ARM 315..433 CDD:237987 62/117 (53%)
armadillo repeat 356..390 CDD:293788 18/33 (55%)
armadillo repeat 399..433 CDD:293788 13/33 (39%)
Arm_3 442..485 CDD:292804 25/49 (51%)
kpna6NP_001008018.1 SRP1 33..511 CDD:227396 227/479 (47%)
armadillo repeat 117..150 CDD:293788 15/32 (47%)
armadillo repeat 158..194 CDD:293788 24/35 (69%)
armadillo repeat 200..235 CDD:293788 10/34 (29%)
armadillo repeat 252..277 CDD:293788 10/24 (42%)
armadillo repeat 285..321 CDD:293788 20/35 (57%)
armadillo repeat 327..361 CDD:293788 20/33 (61%)
armadillo repeat 369..405 CDD:293788 19/35 (54%)
armadillo repeat 412..446 CDD:293788 13/33 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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