DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and alphaKap4

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_648007.1 Gene:alphaKap4 / 38675 FlyBaseID:FBgn0035657 Length:442 Species:Drosophila melanogaster


Alignment Length:476 Identity:174/476 - (36%)
Similarity:261/476 - (54%) Gaps:46/476 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 QNRLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNVPNLDSNTDEEEQLSSSIDLKKL 70
            |.|.:.|..||::...:|      |:.|.|.|:.| :.|...:.|                  .|
  Fly     2 QKRKRRFLKKGQNLMMLR------TLRLEKAKKAE-LQKELTIYN------------------AL 41

  Fly    71 AKAAADATKPEQQLAAVQAARKLLSSDKNPPINDLIQSDILPILVECLKQHNHTMLQFEAAWALT 135
            .|.                  ||.||:..|.:|.|::|:.:..|||.|...|...::.:||.||.
  Fly    42 TKC------------------KLTSSEVVPDVNKLLKSNTIGNLVESLGHGNKNKIRADAADALA 88

  Fly   136 NIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVIKHGVVQPLL 200
            :||||:|..:|.:..|||||..::||.||.|.|||:.:.:|||::...|.|||::|:||::|.|:
  Fly    89 HIASGSSEHSNLIAKAGAVPRLIRLLQSPDPEVCEKGILSLGNLLHFAPNLRDYIIRHGLMQKLM 153

  Fly   201 SFIKPDIPIT-FLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDTNILVDTVWAISYL 264
            |.|:.....| .|.:||||:..||.:..|:||. ...||:.|||:::::.:.|:|.|.:.|:..|
  Fly   154 SIIQDKSTCTLMLSHVTWVLRKLCISSQPSPPD-NAAEIIQALNIVLYNPEANVLEDALMAVRNL 217

  Fly   265 TDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQVVLNYDALSYFPGL 329
            .. ||:.|||:::..|||::|.||.:..|.||.|||:|:.||.|||:||.|.:||.:.|.:...|
  Fly   218 AH-GNETIQMLLDFEVVPRIIYLLEHPNVTVQNAALQALINIATGSEEQIQELLNNNLLPHLSAL 281

  Fly   330 LSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAWAISNLTISG 394
            :|:....||.:.:..|.||..||..|..|::|.|||.||:|.|.......:..||..|:.|.|..
  Fly   282 MSNSDPDIRCQVLKLLLNIADGNIFQRHAIMNAGLLHKILECLKADAISLKSAAALTITTLAIDK 346

  Fly   395 NREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSHVEAVANCIEECEGLAKIER 459
            ::..:..|:::||||.||:||.||:..:::.|||.|:.||.|..|....|:..||....|..|..
  Fly   347 DKNLLCYLMRQGVIPEFCNLLFCQERDILSNVLDILSTMLDVDPSFSAEVSGIIEWSGALNNIRM 411

  Fly   460 LQSHENVEIYKLAYEIIDQYF 480
            |||.|:.||..:|.:||..||
  Fly   412 LQSSEHEEIAAVARKIIGNYF 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 14/80 (18%)
SRP1 8..500 CDD:227396 173/474 (36%)
ARM 104..224 CDD:237987 51/120 (43%)
armadillo repeat 104..137 CDD:293788 11/32 (34%)
armadillo repeat 145..181 CDD:293788 17/35 (49%)
armadillo repeat 187..222 CDD:293788 15/35 (43%)
ARM 236..350 CDD:237987 46/113 (41%)
armadillo repeat 239..264 CDD:293788 7/24 (29%)
armadillo repeat 272..308 CDD:293788 18/35 (51%)
armadillo repeat 314..348 CDD:293788 9/33 (27%)
ARM 315..433 CDD:237987 43/117 (37%)
armadillo repeat 356..390 CDD:293788 12/33 (36%)
armadillo repeat 399..433 CDD:293788 15/33 (45%)
Arm_3 442..485 CDD:292804 16/39 (41%)
alphaKap4NP_648007.1 ARM 57..177 CDD:237987 50/119 (42%)
armadillo repeat 98..134 CDD:293788 17/35 (49%)
armadillo repeat 140..176 CDD:293788 15/35 (43%)
ARM 189..301 CDD:237987 45/112 (40%)
armadillo repeat 192..217 CDD:293788 7/24 (29%)
armadillo repeat 224..260 CDD:293788 18/35 (51%)
armadillo repeat 266..300 CDD:293788 9/33 (27%)
ARM 276..385 CDD:237987 39/108 (36%)
armadillo repeat 308..342 CDD:293788 12/33 (36%)
armadillo repeat 350..383 CDD:293788 14/32 (44%)
Arm_3 400..>433 CDD:292804 15/33 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45444272
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5064
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23316
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.840

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