DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and Spag6l

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_001030132.1 Gene:Spag6l / 360747 RGDID:1310892 Length:507 Species:Rattus norvegicus


Alignment Length:418 Identity:91/418 - (21%)
Similarity:164/418 - (39%) Gaps:30/418 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 VPNLDSNTDEEEQLSSSIDLKKLAKAAADATKPEQQLAAVQAARKLLSSDKNPPINDLIQSDILP 112
            |..|.:.....|.|.::..:..|.....|.....||.||:...|  |::..:.....:::.||||
  Rat    24 VAELATRPQNIETLQNAGVMSLLRPLLLDVVPTIQQTAALALGR--LANYNDDLAEAVVKGDILP 86

  Fly   113 ILVECLKQHNHTMLQFEAAWALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALG 177
            .||..|.:.|. ..:..||:.|..:...:......:|..||:...:..|....|.|.|.|.||||
  Rat    87 QLVYSLAEQNR-FYKKAAAFVLRAVGKHSPQLAQAIVDCGALDTLVICLEDFDPGVKEAAAWALG 150

  Fly   178 NIIGDGPLLRDFVIKHGVVQPLLSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPAL 242
            .|......|...|:..|.: |||.....:..|...|.....:.::.::......|......:..|
  Rat   151 YIARHNTELSQAVVDAGAI-PLLVLCIQEPEIALKRIAASALSDISKHSPELAQTVVDAGAIAHL 214

  Fly   243 NVLIHHTDTNILVDTVWAISYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIV 307
            ..:|.:.|..:....:.|:|.:.....|..:||:|:.:.|.::..|.:.:..|:..|...:..|.
  Rat   215 AQMILNPDAKLKRQVLSALSQIAKHSVDLAEMVVEAEIFPVVLTCLKDKDEYVKKNACTLIREIA 279

  Fly   308 TGSDEQTQVVLNYDALSYFPGLLSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENL 372
            ..:.|.:|:::|...::.....:...|..||...:..|..:.|.:::...|||....:|::...|
  Rat   280 KHTPELSQLIVNAGGVAAVIDCIGSSKGNIRLPGIMMLGYVAAHSENLAMAVIISKGVPQLSICL 344

  Fly   373 S-KGEFQTQKEAAWAISNLTISGNR--EQVFTLIKEGVIPPFCDLL----SCQDTQVINVVLDGL 430
            | :.|...:..||||:..|   |..  |....:.....:|....|.    |.:|.|:        
  Rat   345 SEEPEDHIKAAAAWALGQL---GRHTPEHARAVAVTNTLPVLLSLYMSAESSEDLQL-------- 398

  Fly   431 NNMLKVADSHVEAVANCIEECEGLAKIE 458
                    ...:|:.|.:::|..|..:|
  Rat   399 --------KSKKAIKNILQKCTYLPALE 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 10/39 (26%)
SRP1 8..500 CDD:227396 91/418 (22%)
ARM 104..224 CDD:237987 32/119 (27%)
armadillo repeat 104..137 CDD:293788 11/32 (34%)
armadillo repeat 145..181 CDD:293788 13/35 (37%)
armadillo repeat 187..222 CDD:293788 7/34 (21%)
ARM 236..350 CDD:237987 21/113 (19%)
armadillo repeat 239..264 CDD:293788 5/24 (21%)
armadillo repeat 272..308 CDD:293788 8/35 (23%)
armadillo repeat 314..348 CDD:293788 6/33 (18%)
ARM 315..433 CDD:237987 26/124 (21%)
armadillo repeat 356..390 CDD:293788 11/34 (32%)
armadillo repeat 399..433 CDD:293788 5/37 (14%)
Arm_3 442..485 CDD:292804 5/17 (29%)
Spag6lNP_001030132.1 ARM <31..89 CDD:237987 14/59 (24%)
HEAT repeat 42..73 CDD:293787 8/32 (25%)
ARM 77..195 CDD:237987 32/119 (27%)
HEAT repeat 85..109 CDD:293787 9/24 (38%)
armadillo repeat 120..152 CDD:293788 12/31 (39%)
HEAT_2 130..234 CDD:290374 23/104 (22%)
armadillo repeat 160..196 CDD:293788 7/36 (19%)
ARM 161..279 CDD:237987 21/118 (18%)
armadillo repeat 202..236 CDD:293788 6/33 (18%)
armadillo repeat 244..278 CDD:293788 7/33 (21%)
ARM 245..363 CDD:237987 27/117 (23%)
armadillo repeat 328..360 CDD:293788 10/31 (32%)
ARM 330..434 CDD:237987 24/108 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5064
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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