DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kap-alpha3 and kpna4

DIOPT Version :9

Sequence 1:NP_001163572.1 Gene:Kap-alpha3 / 41158 FlyBaseID:FBgn0027338 Length:514 Species:Drosophila melanogaster
Sequence 2:NP_958462.1 Gene:kpna4 / 327373 ZFINID:ZDB-GENE-030131-5584 Length:521 Species:Danio rerio


Alignment Length:503 Identity:345/503 - (68%)
Similarity:404/503 - (80%) Gaps:5/503 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MEQNRLQNFKNKGKDQDEMRRRRNEVTVELRKNKREETILKRRNVPNLDSNTDEEEQLSSSIDLK 68
            :::.||:||||||:|.:.|||:|.||.||||||||:|.:|||||||:.|...|.:..........
Zfish     7 LDKQRLKNFKNKGRDLETMRRQRTEVVVELRKNKRDEHLLKRRNVPHEDICDDSDADGDFRSQNT 71

  Fly    69 KLAKAAADATKPEQ--QLAAVQAARKLLSSDKNPPINDLIQSDILPILVECLKQHNHTMLQFEAA 131
            .|.....:||...|  ||:||||||||||||:||||:|||:|.||||||.||.:.::..||||||
Zfish    72 SLEAIVQNATSDNQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLDRDDNPSLQFEAA 136

  Fly   132 WALTNIASGTSAQTNEVVAAGAVPLFLQLLNSPAPNVCEQAVWALGNIIGDGPLLRDFVIKHGVV 196
            |||||||||||.||..||.:.||||||:||:||..||||||||||||||||||..||:||..|||
Zfish   137 WALTNIASGTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVV 201

  Fly   197 QPLLSFIKPDIPITFLRNVTWVIVNLCRNKDPAPPTATIHEILPALNVLIHHTDTNILVDTVWAI 261
            :||||||.|.||||||||||||:|||||:|||.||..||.||||||.|||||||.|||||||||:
Zfish   202 KPLLSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVWAL 266

  Fly   262 SYLTDGGNDQIQMVIESGVVPKLIPLLGNSEVKVQTAALRAVGNIVTGSDEQTQVVLNYDALSYF 326
            |||||.||:||||||:||:||.|:|||.:.||||||||||||||||||:|||||||||.|||.:|
Zfish   267 SYLTDAGNEQIQMVIDSGIVPYLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDALGHF 331

  Fly   327 PGLLSHPKEKIRKEAVWFLSNITAGNQSQVQAVINVGLLPKIIENLSKGEFQTQKEAAWAISNLT 391
            |.||:||||||.|||||||||||||||.||||||:..|:|.||..|.||:|.|||||||||||||
Zfish   332 PALLTHPKEKINKEAVWFLSNITAGNQQQVQAVIDANLVPMIILLLDKGDFGTQKEAAWAISNLT 396

  Fly   392 ISGNREQVFTLIKEGVIPPFCDLLSCQDTQVINVVLDGLNNMLKVADSHVEAVANCIEECEGLAK 456
            |||.::||..||::.||||||:||:.:|.||:.||||||:|:||:||...|.|||.||||.||.|
Zfish   397 ISGRKDQVAYLIQQQVIPPFCNLLTVKDAQVVQVVLDGLSNILKMADDEAETVANLIEECGGLEK 461

  Fly   457 IERLQSHENVEIYKLAYEIIDQYFT--DEGEQTNMAPTS-DGAQYNFD 501
            ||:||:|||.:|||||||||||:|:  |..|.:|:.|.: .|..|:|:
Zfish   462 IEQLQNHENEDIYKLAYEIIDQFFSSDDIDEDSNLVPEAIQGGTYSFN 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kap-alpha3NP_001163572.1 IBB 7..88 CDD:280005 40/82 (49%)
SRP1 8..500 CDD:227396 344/496 (69%)
ARM 104..224 CDD:237987 90/119 (76%)
armadillo repeat 104..137 CDD:293788 22/32 (69%)
armadillo repeat 145..181 CDD:293788 26/35 (74%)
armadillo repeat 187..222 CDD:293788 27/34 (79%)
ARM 236..350 CDD:237987 93/113 (82%)
armadillo repeat 239..264 CDD:293788 21/24 (88%)
armadillo repeat 272..308 CDD:293788 28/35 (80%)
armadillo repeat 314..348 CDD:293788 27/33 (82%)
ARM 315..433 CDD:237987 84/117 (72%)
armadillo repeat 356..390 CDD:293788 23/33 (70%)
armadillo repeat 399..433 CDD:293788 20/33 (61%)
Arm_3 442..485 CDD:292804 31/44 (70%)
kpna4NP_958462.1 SRP1 2..520 CDD:227396 345/503 (69%)
IBB 10..93 CDD:280005 40/82 (49%)
armadillo repeat 73..98 CDD:293788 12/24 (50%)
ARM 108..229 CDD:237987 90/120 (75%)
armadillo repeat 109..142 CDD:293788 22/32 (69%)
armadillo repeat 150..186 CDD:293788 26/35 (74%)
armadillo repeat 192..227 CDD:293788 27/34 (79%)
ARM 242..355 CDD:237987 93/112 (83%)
armadillo repeat 244..269 CDD:293788 21/24 (88%)
armadillo repeat 279..311 CDD:293788 24/31 (77%)
armadillo repeat 319..355 CDD:293788 29/35 (83%)
armadillo repeat 361..395 CDD:293788 23/33 (70%)
ARM 362..486 CDD:237987 83/123 (67%)
armadillo repeat 404..438 CDD:293788 20/33 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576829
Domainoid 1 1.000 73 1.000 Domainoid score I9208
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20521
Inparanoid 1 1.050 666 1.000 Inparanoid score I729
OMA 1 1.010 - - QHG54553
OrthoDB 1 1.010 - - D1111872at2759
OrthoFinder 1 1.000 - - FOG0000157
OrthoInspector 1 1.000 - - otm25731
orthoMCL 1 0.900 - - OOG6_104544
Panther 1 1.100 - - LDO PTHR23316
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2158
SonicParanoid 1 1.000 - - X2405
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.900

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